Table 2 Comparison of the genome segments and encoded proteins of SCRV, PHSV, BRDV and LIPV
SCRV (tick-transmitted) | PHSV (isolates only known from horses) | BRDV (tick-transmitted) | LIPV (tick-transmitted) | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Segment 1 | VP1 (Pol) | 151 kDa | RNA-dep.-RNA-Polymerase | Segment 1 | VP1 (Pol) | 151 kDa | RNA-dep.-RNA-Polymerase | Segment 1 | Segment 1 | VP1 (Pol) | 146 kDa | RNA-dep.-RNA-Polymerase | |||
4089 bp | YP_052942 | 1345 AA | 3987 bp | YP_460038 | 1311 AA | 3892 bp | ADM88603 | 1284 AA | |||||||
Segment 2 | VP2 (T2) | 98 kDa | Inner shell | Segment 2 | VP3 (T2) | 105 kDa | Inner shell | Segment 2 | VP2 (T2) | 103 kDa | Inner shell | Segment 2 | VP2 (T2) | 103 kDa | Inner shell |
2747 bp | YP_052943 | 890 AA | 2856 bp | YP_460039 | 925 AA | P35934 | 908 AA | 2793 bp | ADM88604 | 908 AA | |||||
Segment 3 | VP3 | 74 kDa | Outer shell | Segment 3 | VP2 | 104 kDa | Outer shell | Segment 3 | Segment 3 | ||||||
2024 bp | YP_052944 | 654 AA | 2747 bp | YP_460040 | 881 AA | ||||||||||
Segment 4 | VP4 (CaP) | 74 kDa | Capping Enzyme | Segment 4 | VP4 (CaP) | 74 kDa | Capping Enzyme | Segment 4 | VP4 † | 63 kDa † | Outer shell | Segment 4 | |||
2017 bp | YP_052945 | 643 AA | 1996 bp | YP_460041 | 646 AA | ||||||||||
Segment 5 | VP5 | 57 kDa | Outer shell | Segment 5 | NS1 (TuP) | 64 kDa | Forms Tubules | Segment 5 | VP5 | 53 kDa | Outer shell | Segment 5 | |||
1664 bp | YP_052946 | 517 AA | 1784 bp | YP_460045 | 554 AA | 1658 bp | P21230 | 480 AA | |||||||
Segment 6 | NS1 (TuP) | 58 kDa | Forms Tubules | Segment 6 | VP5 | 59 kDa | Outer shell | Segment 6 | NS1 (TuP) | 60 kDa | Formes Tubules | Segment 6 | VP5 | 502 AA †† | Outer shell |
1657 bp | YP_052947 | 517 AA | 1695 bp | YP_460042 | 529 AA | 1714 bp | 2115436A | 537 AA | 1509 bp †† | ADM88605 | |||||
Segment 7 | NS2 (ViP) | 51 kDa | Viral inclusion body matrix protein | Segment 7 | NS2 (ViP) | 48 kDa | Viral inclusion body matrix protein | Segment 7 | VP7 (T13) | 40 kDa | Inner shell | Segment 7 | |||
1463 bp | YP_052948 | 462 AA | 1613 bp | YP_460046 | 435 AA | P35935 | 356 AA | ||||||||
Segment 8 | VP7 (T13) | 41 kDa | Inner shell | Segment 8 | VP7 (T13) | 40 kDa | Inner shell | Segment 8 | Segment 8 | ||||||
1256 bp | YP_052949 | 379 AA | 1180 bp | YP_460044 | 353 AA | ||||||||||
Segment 9 | VP6 (Hel) | 26 kDa | ssRNA and dsRNA binding helicase | Segment 9 | VP6 (Hel) | 37 kDa | ssRNA and dsRNA binding helicase | Segment 9 | Segment 9 | ||||||
764 bp | YP_052950 | 232 AA | 1071 bp | YP_460043 | 334 AA | ||||||||||
Segment 10 | NS3 | 24 kDa | Glycoprotein | Segment 10 | NS3 | 28 kDa | Glycoprotein | Segment 10 | NS3 | 22 kDa | Glycoprotein | Segment 10 | |||
764 bp | YP_052951 | 224 AA | 819 bp | YP_460047 | 255 AA | P32555 | 205 AA | ||||||||