HPV type | Genbank accession of reference sequence | Individual mapping | Simultaneous mapping | ||||||
---|---|---|---|---|---|---|---|---|---|
Read count€ | Coverage# | Percentage of LCR sequenced | Identity° | Read count€ | Coverage# | Percentage of LCR sequenced | Identity° | ||
39* | M62849 | 131419 | 6916.8 | 100 | 100 | 131417 | 6916.7 | 100 | 100 |
16* | FJ610149 | 20258 | 998.3 | 100 | 99.8 | 20258 | 998.3 | 100 | 99.8 |
40* | X74478 | 19984 | 1147.5 | 100 | 99.6 | 19984 | 1147.5 | 100 | 99.6 |
56 | EF177179 | 1940 | 100.2 | 100 | 99.6 | 1940 | 100.2 | 100 | 99.6 |
74 | AF436130 | 1565 | 91.9 | 88.6 | 97.9 | 1560 | 91.6 | 88.6 | 97.9 |
30 | X74474 | 789 | 40.9 | 99.2 | 99.2 | 789 | 40.9 | 99.2 | 99.2 |
71* | NC002644 | 176 | 10.0 | 92.9 | 100 | 176 | 10.0 | 92.9 | 100 |
70* | HPU21941 | 97 | 4.7 | 93.6 | 99.9 | 95 | 4.6 | 93.6 | 99.9 |
35 | PPH35CG | 79 | 4.4 | 84.8 | 99.6 | 79 | 4.4 | 84.8 | 99.6 |
45* | EF202160 | 68 | 3.7 | 92.5 | 98.9 | 68 | 3.7 | 92.5 | 98.9 |
59* | X77858 | 57 | 3.4 | 83.6 | 100 | 57 | 3.4 | 83.6 | 100 |
90 | AY057438 | 55 | 3.6 | 87.4 | 98.6 | 55 | 3.6 | 87.4 | 98.6 |
55* | HPU31791 | 54 | 5.7 | 53.3 | 98.7 | 18 | 2.0 | 50.0 | 98.7 |
86 | AF349909 | 50 | 4.6 | 55.0 | 98.0 | 50 | 4.6 | 55.0 | 98.0 |
81* | AJ620209 | 29 | 2.4 | 61.8 | 100 | 29 | 2.4 | 61.8 | 100 |
53* | NC001593 | 24 | 2.7 | 45.7 | 98.6 | 24 | 2.7 | 45.7 | 98.6 |