Genetic diversity of Imjin virus in the Ussuri white-toothed shrew (Crocidura lasiura) in the Republic of Korea, 2004-2010

Table 4 Percent nucleotide and amino acid sequence similarities of partial L segment of MJNV* compared with other hantaviruses

Strain	MJN 04-3	MJN 04-39	MJN 04-55	MJN 05-8	MJN 05-11	MJN 05-14	MJN 09-21	MJN 09-136	MJN 10-8	TPM	SWS	HTN	SEO	PUU	SN
MJN 04-3		89.1	88.8	97.9	98.7	89.4	98.6	98.4	99.2	71.2	49.9	52.9	50.7	54.4	52.4
MJN 04-39	98.6		98.4	88.9	88.4	99.4	88.9	88.8	88.8	70.2	51.4	53.4	51.0	54.8	54.2
MJN 04-55	97.1	97.6		88.6	88.1	99.1	88.6	88.4	88.4	69.4	50.9	52.6	50.7	54.2	52.5
MJN 05-8	100	98.6	97.1		97.6	89.2	98.7	98.9	97.6	71.2	51.0	52.6	51.0	54.4	52.2
MJN 05-11	99.0	97.6	96.2	99.0		88.8	98.3	98.1	98.4	70.8	50.2	52.5	51.2	54.4	51.9
MJN 05-14	99.0	99.5	98.1	99.0	98.1		89.2	89.1	89.1	71.2	50.2	53.4	51.0	55.0	53.0
MJN 09-21	100	98.6	97.1	100	99.0	99.0		99.8	98.3	70.5	50.4	52.8	50.9	54.7	51.9
MJN 09-136	100	98.6	97.1	100	99.0	99.0	100		98.1	70.7	50.4	52.6	50.7	54.5	51.7
MJN 10-8	99.5	98.1	96.7	99.5	98.6	98.6	99.5	99.5		71.5	50.2	53.1	50.7	53.9	52.5
TPM	67.6	67.6	66.7	67.6	67.6	68.1	67.6	67.6	67.1		50.5	51.7	50.9	55.2	52.8
SWS	39.5	40.5	39.0	39.5	39.5	40.0	39.5	39.5	39.5	62.2		63.2	61.5	56.8	58.7
HTN	42.9	42.4	41.9	42.9	42.4	42.9	42.9	42.9	42.9	43.1	55.9		70.2	58.2	57.6
SEO	41.0	41.0	40.0	41.0	40.5	41.0	41.0	41.0	41.0	38.4	58.2	77.9		58.2	59.3
PUU	45.7	45.2	44.8	45.7	45.7	45.7	45.7	45.7	45.2	46.4	53.1	54.0	77.9		64.6
SN	45.7	46.7	45.2	45.7	45.7	46.2	45.7	45.7	45.7	46.4	54.9	54.5	55.4	64.8

*MJNV strains 04-3, 05-11, 10-8 from Paju City; MJNV strains 04-39, 04-55, 05-14 from Yeoncheon-gun; MJNV strain 05-8, 09-21, 09-136 from Pocheon City.
Amino acid similarity shown on bottom triangle and nucleotide similarity shown on top triangle.

ISSN: 1743-422X