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Table 2 The relationship of the synonymous codon usage pattern between HBV and human cell

From: The characteristics of the synonymous codon usage in hepatitis B virus and the effects of host on the virus in codon usage pattern

Codon/Amino acid

HBV

Humana

TTT(F)

1.06

0.87

TTC(F)

0.94

1.13

TTA(L)

0.67

0.39

TTG(L)

1.08

0.73

CTT(L)

1.11

0.73

CTC(L)

1.22

1.22

CTA(L)

0.85

0.40

CTG(L)

1.06

2.53

ATT(I)

1.27

1.04

ATC(I)

1.26

1.52

ATA(I)

0.48

0.44

GTT(V)

1.27

0.69

GTC(V)

0.91

1.00

GTA(V)

0.65

0.42

GTG(V)

1.17

1.90

TCT(S)

1.69

1.11

TCC(S)

1.48

1.39

TCA(S)

1.28

0.84

TCG(S)

0.58

0.33

AGT(S)

1.48

0.84

AGC(S)

1.01

1.50

CCT(P)

0.99

1.12

CCC(P)

0.51

1.35

CCA(P)

1.37

1.07

CCG(P)

1.38

0.46

ACT(T)

0.89

0.94

ACC(T)

0.37

1.52

ACA(T)

1.32

1.07

ACG(T)

1.24

0.46

GCT(A)

0.99

1.09

GCC(A)

0.45

1.64

GCA(A)

1.27

0.85

GCG(A)

0.73

0.42

TAT(Y)

1.05

0.84

TAC(Y)

0.95

1.16

CAT(H)

1.21

0.81

CAC(H)

0.79

1.19

CAA(Q)

1.08

0.51

CAG(Q)

0.92

1.49

AAT(N)

1.36

0.89

AAC(N)

0.64

1.11

AAA(K)

0.73

0.82

AAG(K)

1.27

1.18

GAT(D)

1.04

0.89

GAC(D)

0.96

1.11

GAA(E)

1.23

0.81

GAG(E)

0.77

1.19

TGT(C)

0.80

0.86

TGC(C)

1.06

1.14

CGT(R)

0.48

0.51

CGC(R)

0.78

1.20

CGA(R)

0.61

0.63

CGG(R)

0.37

1.20

AGA(R)

1.49

1.20

AGG(R)

1.39

1.26

GGT(G)

0.60

0.64

GGC(G)

0.81

1.40

GGA(G)

1.36

0.98

GGG(G)

1.22

0.98

  1. a the synonymous codon usage pattern of human cell was calculated based on the data of the synonymous codon usage frequencies of human cell.