The characteristics of the synonymous codon usage in hepatitis B virus and the effects of host on the virus in codon usage pattern

Ma, Ming-ren; Ha, Xiao-qin; Ling, Hui; Wang, Mei-liang; Zhang, Fang-xin; Zhang, Shang-di; Li, Ge; Yan, Wei

doi:10.1186/1743-422X-8-544

Virology Journal

Table 1 The overall nucleotide contents and nucleotide contents at the synonymous third position of sense codons in the whole coding sequence of HBV

From: The characteristics of the synonymous codon usage in hepatitis B virus and the effects of host on the virus in codon usage pattern

No.	T%	C%	A%	G%	T₃%	C₃%	A₃%	G₃%
1	27.88	28.16	22.21	21.75	29.94	27.27	21.23	21.56
2	28.28	28.04	21.59	22.09	29.75	27.90	20.57	21.78
3	27.35	28.20	22.04	22.42	29.40	27.04	21.19	22.37
4	27.56	28.33	21.96	22.15	29.44	27.58	20.91	22.07
5	27.85	27.87	22.26	22.02	30.23	26.33	21.75	21.69
6	27.56	28.50	21.93	22.02	29.20	27.73	21.12	21.95
7	27.60	28.50	21.93	21.97	29.27	27.73	21.12	21.89
8	27.60	28.50	21.87	22.04	29.27	27.73	21.05	21.95
9	28.09	27.38	21.88	22.64	29.94	26.10	21.55	22.40
10	28.35	27.23	23.29	21.13	31.95	25.71	22.51	19.83
11	28.12	27.48	21.88	22.52	29.73	26.53	21.48	22.26
12	27.54	27.83	21.87	22.77	28.68	27.54	21.22	22.57
13	28.21	26.97	23.04	21.78	29.04	27.58	21.65	21.73
14	27.95	28.17	21.52	22.35	29.96	27.41	20.76	21.88
15	27.95	28.11	21.79	22.15	30.14	27.04	21.19	21.63
16	27.43	28.01	21.98	22.58	29.58	26.79	21.07	22.56
17	28.65	27.79	21.75	21.82	30.55	27.04	21.14	21.28
18	28.72	27.91	21.39	21.98	29.75	26.45	21.75	22.05
19	28.57	28.40	21.21	21.82	28.25	28.35	21.15	22.25
20	28.55	28.41	21.22	21.82	28.23	28.34	21.19	22.24
21	28.57	28.39	21.22	21.82	28.23	28.34	21.19	22.24
22	28.34	28.27	21.62	21.77	29.48	27.47	21.19	21.86
23	28.22	28.07	21.66	22.04	29.66	27.05	21.24	22.04
24	28.43	28.00	21.65	21.91	30.25	27.24	21.22	21.29
25	27.57	27.99	21.81	22.62	29.71	26.79	20.94	22.56
26	28.74	27.98	21.56	21.72	29.78	26.53	21.96	21.74
27	28.60	28.24	21.39	21.77	29.34	27.14	21.70	21.83
28	28.68	28.17	21.64	21.52	29.56	27.01	21.96	21.48
29	28.78	28.14	21.43	21.65	29.60	26.97	21.74	21.70
30	28.66	28.25	21.36	21.72	29.47	26.97	21.56	22.00
31	28.78	27.68	22.10	21.45	30.76	25.77	22.13	21.34
32	29.07	27.45	21.85	21.63	30.85	25.90	21.91	21.34
33	29.08	27.56	21.65	21.71	30.76	26.25	21.65	21.34
34	28.81	27.42	22.08	21.69	30.63	25.68	22.34	21.34
35	28.39	27.90	21.71	22.01	29.67	26.72	21.52	22.08
36	28.72	27.77	21.92	21.59	30.59	26.12	22.08	21.21
37	28.98	27.52	21.89	21.61	30.63	26.16	21.87	21.34
38	28.95	27.61	21.89	21.55	30.67	26.25	22.04	21.04
39	29.05	27.42	21.85	21.68	30.89	25.81	22.08	21.21
40	28.95	27.59	21.91	21.55	30.85	25.99	21.74	21.43
41	28.42	27.75	21.79	22.04	29.89	26.46	21.78	21.87
42	28.88	27.45	21.89	21.78	30.76	25.55	22.08	21.61
43	28.47	27.65	22.25	21.63	30.91	26.21	21.74	21.14
44	28.99	27.49	21.92	21.59	30.37	26.03	22.21	21.39
45	28.99	27.45	21.95	21.61	30.55	25.90	22.12	21.42
46	28.71	27.72	21.97	21.61	30.28	26.38	22.17	21.17
47	28.71	27.72	21.97	21.61	30.28	26.38	22.17	21.17
48	27.51	27.78	22.15	22.55	29.81	26.46	21.52	22.22
49	27.43	27.93	21.98	22.66	29.21	26.91	21.19	22.68
50	27.43	27.93	21.98	22.66	29.21	26.91	21.19	22.68
51	27.41	27.95	21.92	22.73	29.33	26.66	21.26	22.75
52	27.45	27.99	21.86	22.71	29.52	26.72	21.01	22.75
53	27.49	27.95	21.84	22.73	29.52	26.60	21.26	22.62
54	27.64	27.97	21.83	22.56	29.44	27.23	20.85	22.49
55	27.45	27.91	21.96	22.68	29.33	26.72	21.32	22.62
56	27.41	27.91	22.04	22.64	29.40	26.72	21.44	22.44
57	27.60	28.50	21.87	22.04	29.27	27.73	21.05	21.95
58	27.79	28.33	22.20	21.68	29.80	27.41	21.55	21.24

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ISSN: 1743-422X

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