Table 3 Identified nucleotide contents in complete coding region (length > 250 bps) in the ORF2 of RHDV (30 isolates) genome
From: Bioinformatics analysis of rabbit haemorrhagic disease virus genome
SN | A% | A3% | U% | U3% | C% | C3% | G% | G3% | (C+G)% | (C3+G3)% | ENC |
|---|---|---|---|---|---|---|---|---|---|---|---|
1 | 29.944 | 17.797 | 30.791 | 44.068 | 13.842 | 16.102 | 25.424 | 22.034 | 39.266 | 38.136 | 49.377 |
2 | 29.944 | 18.644 | 30.226 | 43.220 | 14.407 | 16.949 | 25.424 | 21.186 | 39.831 | 38.135 | 48.182 |
3 | 31.356 | 20.339 | 31.638 | 46.610 | 12.994 | 13.559 | 24.011 | 19.492 | 37.005 | 33.051 | 44.567 |
4 | 30.508 | 18.644 | 30.791 | 44.915 | 13.842 | 15.254 | 24.859 | 21.186 | 38.701 | 36.440 | 46.686 |
5 | 29.944 | 17.797 | 31.921 | 46.610 | 12.712 | 13.559 | 25.424 | 22.034 | 38.136 | 35.593 | 41.215 |
6 | 30.226 | 16.949 | 30.226 | 43.220 | 14.407 | 16.949 | 25.141 | 22.881 | 39.548 | 39.830 | 51.964 |
7 | 31.356 | 19.492 | 30.791 | 45.763 | 14.124 | 15.254 | 23.729 | 19.492 | 37.853 | 34.764 | 45.757 |
8 | 30.226 | 16.949 | 29.661 | 43.220 | 15.254 | 17.797 | 24.859 | 22.034 | 40.113 | 39.831 | 47.242 |
9 | 30.508 | 18.644 | 31.356 | 45.763 | 13.277 | 14.407 | 24.859 | 21.186 | 38.136 | 35.593 | 43.017 |
10 | 31.356 | 20.339 | 31.638 | 46.610 | 12.994 | 13.559 | 24.011 | 19.492 | 37.005 | 33.051 | 44.576 |
11 | 29.782 | 17.518 | 33.898 | 48.175 | 12.107 | 13.139 | 24.213 | 21.168 | 36.320 | 34.307 | 43.088 |
12 | 31.638 | 21.186 | 31.073 | 45.763 | 12.994 | 13.559 | 24.294 | 19.492 | 37.288 | 33.051 | 44.997 |
13 | 31.073 | 18.644 | 31.638 | 46.610 | 13.277 | 14.407 | 24.011 | 20.339 | 37.288 | 34.746 | 43.213 |
14 | 31.638 | 19.492 | 31.921 | 47.458 | 12.994 | 13.559 | 23.446 | 19.492 | 36.440 | 33.051 | 47.214 |
15 | 31.921 | 20.339 | 31.921 | 46.610 | 12.712 | 13.559 | 23.446 | 19.492 | 36.158 | 33.051 | 41.964 |
16 | 30.226 | 18.644 | 30.508 | 43.220 | 14.124 | 16.949 | 25.141 | 21.186 | 39.265 | 38.135 | 47.603 |
17 | 30.508 | 19.492 | 30.508 | 43.220 | 13.559 | 15.254 | 25.424 | 22.034 | 38.983 | 37.288 | 47.615 |
18 | 29.096 | 16.102 | 31.356 | 45.763 | 13.277 | 14.407 | 26.271 | 23.729 | 39.548 | 38.136 | 44.343 |
19 | 30.226 | 19.492 | 31.073 | 44.915 | 13.559 | 15.254 | 25.141 | 20.339 | 38.700 | 35.593 | 46.768 |
20 | 31.638 | 19.492 | 32.768 | 49.153 | 11.864 | 11.017 | 23.729 | 20.339 | 35.593 | 31.356 | 39.771 |
21 | 31.638 | 19.492 | 32.768 | 49.153 | 11.864 | 11.017 | 23.729 | 20.339 | 35.593 | 31.356 | 39.771 |
22 | 31.073 | 19.492 | 31.356 | 45.763 | 12.994 | 13.559 | 24.576 | 21.186 | 37.570 | 34.745 | 43.282 |
23 | 31.356 | 19.492 | 31.921 | 47.458 | 12.994 | 13.559 | 23.729 | 19.492 | 36.723 | 33.051 | 42.633 |
24 | 31.638 | 20.339 | 31.921 | 47.458 | 12.994 | 13.559 | 23.446 | 18.644 | 36.440 | 32.203 | 42.157 |
25 | 31.638 | 20.339 | 32.203 | 48.305 | 12.712 | 12.712 | 23.446 | 18.644 | 36.185 | 31.356 | 40.006 |
26 | 31.638 | 20.339 | 32.203 | 48.305 | 12.712 | 12.712 | 23.446 | 18.644 | 36.185 | 31.356 | 40.006 |
27 | 30.226 | 17.797 | 31.073 | 44.915 | 13.559 | 15.254 | 25.141 | 22.034 | 38.700 | 37.288 | 42.799 |
28 | 31.356 | 18.644 | 31.356 | 45.763 | 13.559 | 15.254 | 23.729 | 20.339 | 37.288 | 35.593 | 45.413 |
29 | 31.638 | 21.186 | 31.638 | 46.610 | 12.712 | 12.712 | 24.011 | 19.492 | 36.723 | 32.204 | 43.618 |
30 | 31.638 | 21.186 | 31.073 | 45.763 | 12.994 | 13.559 | 24.294 | 19.492 | 37.288 | 32.721 | 44.997 |