Table 2 Identified nucleotide contents in complete coding region (length > 250 bps) in the ORF1 of RHDV (30 isolates) genome
From: Bioinformatics analysis of rabbit haemorrhagic disease virus genome
SN | A% | A3% | U% | U3% | C% | C3% | G% | G3% | (C+G)% | (C3+G3)% | ENC |
|---|---|---|---|---|---|---|---|---|---|---|---|
1 | 25.302 | 18.252 | 23.340 | 23.497 | 25.544 | 33.348 | 25.814 | 24.904 | 51.358 | 58.252 | 54.786 |
2 | 25.387 | 18.294 | 23.738 | 24.691 | 25.146 | 32.281 | 25.729 | 24.733 | 51.386 | 57.014 | 55.201 |
3 | 25.515 | 18.678 | 23.298 | 23.795 | 25.657 | 33.220 | 25.529 | 24.307 | 51.186 | 57.527 | 55.05 |
4 | 25.899 | 19.488 | 22.758 | 21.876 | 26.141 | 35.053 | 25.203 | 23.582 | 51.344 | 58.635 | 54.68 |
5 | 25.515 | 18.593 | 23.554 | 24.136 | 25.373 | 32.878 | 25.558 | 24.392 | 50.931 | 57.270 | 55.491 |
6 | 25.458 | 18.294 | 23.554 | 24.222 | 25.444 | 32.921 | 25.544 | 24.563 | 50.988 | 57.484 | 55.268 |
7 | 25.359 | 18.806 | 23.454 | 23.667 | 25.487 | 33.262 | 25.700 | 24.264 | 51.187 | 57.526 | 54.723 |
8 | 25.402 | 18.721 | 23.412 | 23.625 | 25.544 | 33.305 | 25.643 | 24.350 | 51.187 | 57.655 | 55.031 |
9 | 25.615 | 19.062 | 23.383 | 23.625 | 25.544 | 33.433 | 25.458 | 23.881 | 51.002 | 57.314 | 54.906 |
10 | 25.430 | 18.593 | 23.383 | 23.966 | 25.629 | 33.006 | 25.558 | 24.435 | 51.187 | 57.441 | 55.439 |
11 | 25.288 | 17.910 | 23.596 | 24.435 | 25.402 | 32.751 | 25.714 | 24.904 | 51.116 | 57.665 | 54.984 |
12 | 25.529 | 18.635 | 23.412 | 23.838 | 25.515 | 33.092 | 25.544 | 24.435 | 51.059 | 57.527 | 55.203 |
13 | 25.387 | 18.380 | 23.611 | 23.966 | 25.316 | 33.006 | 25.686 | 24.648 | 51.002 | 57.654 | 54.681 |
14 | 25.274 | 18.124 | 23.426 | 23.582 | 25.544 | 33.433 | 25.757 | 24.861 | 51.301 | 58.294 | 54.548 |
15 | 25.203 | 18.166 | 23.724 | 24.691 | 25.188 | 32.239 | 25.885 | 24.904 | 51.073 | 57.143 | 55.429 |
16 | 25.487 | 18.721 | 23.326 | 23.326 | 25.601 | 33.603 | 25.586 | 24.350 | 51.187 | 57.953 | 55.148 |
17 | 25.444 | 18.507 | 23.369 | 23.582 | 25.572 | 33.433 | 25.615 | 24.478 | 51.187 | 57.911 | 55.27 |
18 | 25.572 | 18.806 | 23.539 | 24.179 | 25.416 | 32.836 | 25.473 | 24.179 | 50.889 | 57.015 | 55.417 |
19 | 25.487 | 18.507 | 23.582 | 24.136 | 25.359 | 32.964 | 25.572 | 24.392 | 50.931 | 57.356 | 55.384 |
20 | 25.558 | 18.806 | 23.426 | 23.966 | 25.473 | 32.878 | 25.544 | 24.350 | 51.017 | 57.228 | 55.165 |
21 | 25.544 | 18.721 | 23.426 | 24.009 | 25.529 | 33.006 | 25.501 | 24.264 | 51.030 | 57.270 | 55.156 |
22 | 25.160 | 17.783 | 23.312 | 23.326 | 25.729 | 33.689 | 25.800 | 25.203 | 51.529 | 58.892 | 54.682 |
23 | 25.487 | 18.806 | 23.511 | 23.710 | 25.529 | 33.433 | 25.473 | 24.051 | 51.002 | 57.487 | 54.192 |
24 | 25.387 | 18.593 | 23.497 | 23.667 | 25.572 | 33.348 | 25.544 | 24.392 | 51.116 | 57.740 | 54.213 |
25 | 25.330 | 18.635 | 23.483 | 23.582 | 25.615 | 33.433 | 25.572 | 24.350 | 51.187 | 57.783 | 54.238 |
26 | 25.387 | 18.593 | 23.511 | 23.710 | 25.572 | 33.390 | 25.529 | 24.307 | 51.101 | 57.697 | 54.285 |
27 | 25.330 | 18.209 | 23.511 | 24.264 | 25.487 | 32.964 | 25.672 | 24.563 | 51.159 | 57.527 | 55.267 |
28 | 25.448 | 18.643 | 23.443 | 23.635 | 25.576 | 33.362 | 25.533 | 24.360 | 51.109 | 57.722 | 54.614 |
29 | 25.174 | 17.868 | 23.269 | 23.156 | 25.686 | 33.817 | 25.871 | 25.160 | 51.557 | 58.977 | 54.842 |
30 | 25.529 | 18.635 | 23.412 | 23.838 | 25.515 | 33.092 | 25.544 | 24.435 | 51.059 | 57.527 | 55.203 |