Table 2 Sequence identity matrix of the capsid protein (ORF2) and the nucleotide alignment of the whole genome of the PCV2 isolates found in Malaysia
From: Genetic characterization of Porcine Circovirus 2 found in Malaysia
Sequences | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
(1) AY484407 PCV2b | Â | 98.4 | 98.6 | 98.4 | 98.6 | 99.2 | 99.3 | 98.4 | 99.1 | 99 | 98.3 | 98.4 | 98.6 | 98.3 | 99.5 | 99.5 | 99.2 | 99.2 | 99.6 | 99.7 | 99.5 | 76.2 |
(2) JF690912 Mal003/11 | 98.7 | Â | 99.6 | 99.7 | 99.5 | 97.7 | 98 | 97.5 | 98.9 | 98.9 | 99.5 | 99.7 | 99.6 | 99.4 | 98 | 98.1 | 98 | 97.9 | 98.3 | 98.2 | 98.1 | 76.5 |
(3) JF690913 Mal004/11 | 98.7 | 98.7 | Â | 99.6 | 99.9 | 97.9 | 98.3 | 97.9 | 99.3 | 99.3 | 99.6 | 99.7 | 99.7 | 99.4 | 98.4 | 98.5 | 98.3 | 98.3 | 98.6 | 98.4 | 98.5 | 76.4 |
(4) JF690914 Mal005/11 | 96.5 | 96.1 | 96.5 | Â | 99.7 | 97.7 | 98 | 97.6 | 99.1 | 99 | 99.6 | 99.7 | 99.6 | 99.5 | 98.1 | 98.3 | 98 | 98 | 98.4 | 98.2 | 98.3 | 76.3 |
(5) JF690915 Mal006/11 | 97.4 | 96.9 | 96.9 | 94.8 | Â | 97.9 | 98.3 | 97.9 | 99.4 | 99.2 | 99.5 | 99.6 | 99.7 | 99.4 | 98.4 | 98.5 | 98.3 | 98.3 | 98.6 | 98.4 | 98.5 | 76.3 |
(6) JF690916 Mal007/11 | 96.5 | 96.1 | 96.1 | 94 | 99.1 | Â | 98.8 | 97.9 | 98.4 | 98.4 | 97.6 | 97.7 | 98 | 97.6 | 98.7 | 98.7 | 98.4 | 98.4 | 98.8 | 98.9 | 98.7 | 75.5 |
(7) JF690917 Mal008/11 | 96.1 | 95.7 | 95.7 | 93.5 | 98.7 | 99.5 | Â | 98.1 | 98.8 | 98.7 | 98 | 98 | 98.3 | 97.9 | 98.9 | 98.9 | 98.5 | 98.6 | 99 | 99 | 98.8 | 76 |
(8) JF690918 Mal009/11 | 96.5 | 96.1 | 96.1 | 94 | 98.7 | 99.5 | 99.1 | Â | 98.4 | 98.3 | 97.5 | 97.6 | 97.8 | 97.5 | 98.3 | 98.4 | 97.7 | 98.1 | 98.5 | 98.3 | 98.2 | 75.4 |
(9) JF690919 Mal010/11 | 95.7 | 95.2 | 95.2 | 93.1 | 97.8 | 98.7 | 99.1 | 99.1 | Â | 99.8 | 98.9 | 99 | 99.2 | 98.9 | 98.9 | 99 | 98.5 | 98.8 | 99.1 | 98.9 | 99 | 76.4 |
(10) JF690920 Mal011/11 | 97.4 | 96.9 | 96.9 | 94.8 | 99.5 | 98.7 | 98.2 | 99.1 | 98.2 | Â | 99.1 | 99.1 | 99.3 | 99 | 98.8 | 98.9 | 98.5 | 98.7 | 99 | 98.9 | 98.9 | 76.5 |
(11) JF690921 Mal012/11 | 96.1 | 95.7 | 95.7 | 93.5 | 98.2 | 99.1 | 99.5 | 99.5 | 99.5 | 98.7 | Â | 99.5 | 99.5 | 99.6 | 98 | 98.1 | 98 | 97.9 | 98.3 | 98.1 | 98.1 | 76.4 |
(12) JF690922 Mal013/11 | 96.1 | 95.7 | 95.7 | 93.5 | 98.2 | 99.1 | 99.5 | 99.5 | 99.5 | 98.7 | 100 | Â | 99.7 | 99.6 | 98.1 | 98.3 | 98 | 98 | 98.4 | 98.2 | 98.3 | 76.4 |
(13) JF690923 Mal001/11 | 96.5 | 96.1 | 96.1 | 94 | 98.7 | 99.5 | 99.1 | 100 | 99.1 | 99.1 | 99.5 | 99.5 | Â | 99.6 | 98.3 | 98.4 | 98.3 | 98.2 | 98.5 | 98.5 | 98.4 | 76.4 |
(14) JF690911 Mal002/11 | 96.1 | 95.7 | 95.7 | 93.5 | 98.2 | 99.1 | 99.5 | 99.5 | 99.5 | 98.7 | 100 | 100 | 99.5 | Â | 98 | 98.1 | 97.9 | 97.9 | 98.3 | 98.1 | 98.1 | 76.3 |
(15) AY682992 PCV2b | 100 | 98.7 | 98.7 | 96.5 | 97.4 | 96.5 | 96.1 | 96.5 | 95.7 | 97.4 | 96.1 | 96.1 | 96.5 | 96.1 | Â | 99.5 | 98.8 | 99.2 | 99.6 | 99.3 | 99.3 | 76 |
(16) EU418627 PCV2b | 100 | 98.7 | 98.7 | 96.5 | 97.4 | 96.5 | 96.1 | 96.5 | 95.7 | 97.4 | 96.1 | 96.1 | 96.5 | 96.1 | 100 | Â | 98.8 | 99.3 | 99.7 | 99.3 | 99.3 | 76.1 |
(17) FJ905469 PCV2b | 98.7 | 97.4 | 97.4 | 95.2 | 96.9 | 97 | 96.5 | 97 | 96.1 | 96.9 | 96.5 | 96.5 | 97 | 96.5 | 98.7 | 98.7 | Â | 98.5 | 98.9 | 99 | 99 | 76.1 |
(18) FJ905470 PCV2b | 99.1 | 97.8 | 97.8 | 95.7 | 96.9 | 96.1 | 95.7 | 96.1 | 95.2 | 96.9 | 95.7 | 95.7 | 96.1 | 95.7 | 99.1 | 99.1 | 97.8 | Â | 99.4 | 99.2 | 99 | 75.9 |
(19) GU247989 PCV2b | 99.5 | 98.2 | 98.2 | 96.1 | 96.9 | 96.1 | 95.7 | 96.1 | 95.2 | 96.9 | 95.7 | 95.7 | 96.1 | 95.7 | 99.5 | 99.5 | 98.2 | 98.7 | Â | 99.4 | 99.4 | 76.1 |
(20) HQ831530 PCV2b | 100 | 98.7 | 98.7 | 96.5 | 97.4 | 96.5 | 96.1 | 96.5 | 95.7 | 97.4 | 96.1 | 96.1 | 96.4 | 96.1 | 100 | 100 | 98.7 | 99.1 | 99.5 | Â | 99.3 | 76.2 |
(21) HQ831532 PCV2b | 99.5 | 98.5 | 98.2 | 96.1 | 97.8 | 97 | 96.5 | 97 | 96.1 | 97.8 | 96.5 | 96.5 | 97.1 | 96.5 | 99.5 | 99.5 | 99.1 | 98.7 | 99.1 | 99.5 | Â | 76.4 |
(22) U49186 PCV1 | 67.6 | 66.9 | 67.7 | 66.9 | 67.3 | 66.8 | 66.8 | 65.1 | 68 | 68.5 | 67.3 | 67.3 | 67.7 | 67.3 | 67.6 | 67.6 | 67.2 | 67.2 | 67.2 | 67.6 | 67.6 | Â |