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Table 1 Amino acid sequence of the predicted VP1 protein CD8+ T cell epitopes and BIMAS scores

From: Identification of H-2d Restricted T Cell Epitope of Foot-and-mouth Disease Virus Structural Protein VP1

MHC-restriction Code Start Position Subsequence Residue Listing Score
H-2Ld pL1 103 NPTAYHKGPF 300
  pL2 117 LPYTAPHRVL 150
  pL3 89 VPNGAPETAL 150
  pL4 9 DPVTTTVENY 72
  pL5 121 APHRVLATVY 60
  pL6 110 GPFTRLALPY 60
  pL7 45 QSPTHVIDLM 37.5
  pL8 42 IPSQSPTHVI 30
  pL9 158 LPASFNFGAI 30
  pL10 188 RPLLAVKVTS 30
H-2Dd pD1 138 TGNAGRRGDL 30
  pD2 109 KGPFTRLALP 24
  pD3 141 AGRRGDLGS 3
  pD4 62 VGALLRAATY 10
  pD5 45 QSPTHVIDLM 7.2
  pD6 41 KIPSQSPTHV 7.2
  pD7 33 GFIMDRFVKI 6
  pD8 116 ALPYTAPHRV 6
  pD9 56 THQHGLVGAL 3
  pD10 197 SQDRHKQRII 20
H-2Kd pK1 106 AYHKGPFTRL 3456
  pK2 33 FIMDRFVKI 1920
  pK3 163 NFGAIRATVI 1152
  pK4 71 YYFSDLEIVV 720
  pK5 70 TYYFSDLEIV 600
  pK6 184 LYCPTPLLAV 600
  pK7 204 RIIAPAKQLL 115.2
  pK8 52 DLMQTHQHGL 80
  pK9 77 EIVVRHDDNL 80
  pK10 175 LLVRVKRAEL 80