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Table 2 LCR probes for resistance mutations detection

From: Synthetic long oligonucleotides to generate artificial templates for use as positive controls in molecular assays: drug resistance mutations in influenza virus as an example

Mutation type

Probe sequences

N2-119VAL

5' AAGGGGACATCTGGGTGACAAGAGT 3'

 

5' aP-NCCTTATGTGTCATGCGATCCTGACAA 3'

 

5' ACCTTGTCAGGATCGCATGACACATAAGGNA 3'

 

5' P-CTCTTGTCACCCAGATGTCCCCAC 3'

N2-292LYS

5' ATGATATCCTGGTGTCAGATGTGTCTGCAA 3'

 

5' P-RGACAACTGGAAAGGCTCCAATAGGC 3'

 

5' CCCCTATTGGAGCCTTTCCAGTTGTCYT 3'

 

5' P-TGCAGACACATCTGACACCAGGATATCGAG 3'

N1-274Y

5' TGTTACTAAATCAATAGAGTTGAATGCACCCAATTTTT 3'

 

5' P-ATTATGAGGAATGTTCCTGTTACCCACACAC 3'

 

5' TTGTGTCTGGGTAACAGGAACATTCCTCATAATA 3'

 

5' P-AAAATTGGGTGCATTCAACTCTATTGATTTAGTAACC 3'

H5N1-274Y

5' TCGGTTAAATCAGTCGAATTGGATGCTCCTAATTATT 3'

 

5' P-ACTATGAGGAATGCTCCTGTTATCCTGATG 3'

 

5' TTGCATCAGGATAACAGGAGCATTCCTCATAGTA 3'

 

5' P-ATAATTAGGAGCATCCAATTCG 3'

  1. a. P- indicates 5' phosphorylation