Table 3 Categorization of genes according to the reported function available from literature
FORWARD | REVERSE | |
|---|---|---|
Membrane proteins | Cadherin 11 | Transmembrane protein 30A |
Lysosomal-associated membrane protein 1 | ||
CD9 protein | ||
Leucine-rich repeats and calponin homology (CH) domain containing 4 | ||
Cellular Respiration | Pyruvate dehydrogenase E1-beta subunit | Alpha enolase |
Succinate-CoA ligase, GDP-forming, alpha subunit(SUCLG1) | Hydroxyacyl glutathione hydrolase-like | |
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2(ATP5J2) | ATPase8, ATPase6 genes for F0-ATP synthase subunit 8, F0-ATP synthase subunit 6 | |
Cytochrome oxidase subunit I (COI) | ||
Cytoskeletal | Filamin B, beta | Beta-actin |
T-complex 1 | ||
Microtubule-associated protein RP/EB family, member 1 | ||
Similar to Ankycorbin | ||
Signal Transduction | Beta-catenin isolate 3 | TRAF interacting protein (TRAIP) |
Quaking homolog, KH domain | ||
Transcription and Translation | High mobility group AT-hook 2 (HMGA2) | Splicing factor, arginine/serine-rich 18 (SFRS18) |
High-mobility group box 3 | MYST/Esa1-associated factor 6 | |
Heat shock transcription factor 2 (HSF2) | Y box binding protein 1 | |
CWC22 spliceosome-associated protein homolog | Ribosomal protein L35a | |
Ubiquitin-like, containing PHD and RING finger domains, 1 (UHRF1) | Eukaryotic translation initiation factor 5 (EIF5) | |
Nuclear protein Matrin 3 (MATR3) | ||
Ribosomal protein L6 (RPL6) | ||
Ribophorin I | ||
Ubiquitin-proteasome | Ubiquitin specific peptidase 47 (USP47) | Proteasome (prosome, macropain) 26S subunit, ATPase,1 (PSMC1) |
Sequestosome 1 | ||
Apoptosis | Tumor necrosis factor receptor superfamily, member 6b, decoy (TNFRSF6B) | Caspase 3, apoptosis-related cysteine peptidase (CASP3) |
Others | Anas platyrhynchos female-specific sequence | No significant similarity found |
Junco hyemalis 164 gene, partial sequence | UPF0308 protein | |
Gallus gallus finished cDNA, clone ChEST457d18 | No significant similarity found | |
No significant similarity found | Gallus gallus finished cDNA, clone ChEST757h13 | |
Gallus gallus finished cDNA, clone ChEST855m19 | Gallus gallus finished cDNA, clone ChEST191i5 | |
Zebrafish DNA sequence from clone CH211-276C22 in linkage group 6 | Gallus gallus BAC clone CH261-189F16 from chromosome z | |
Similar to SH3 domain containing 19 | Gallus gallus hypothetical protein | |
Zinc finger CCCH-type containing 13 (ZC3H13) | Gallus gallus similar to MGC53471 protein | |
ElaC homolog 2 (E. coli) (ELAC2) | Ferritin, heavy polypeptide 1 (FTH1) | |
Similar to KIAA2019 protein/AHNAK nucleoprotein 2 | Zinc finger CCCH-type, antiviral 1 (ZC3HAV1) | |
CLE7 | Similar to RGD-CAP | |
Cu/Zn superoxide dismutase (SOD1) | Versican | |
Exonuclease NEF-sp | Platelet-activating factor acetylhydrolase isoform Ib, alpha subunit 45kDa (PAFAH1B1) | |
Component of oligomeric golgi complex 3 (COG3) | Catechol-O-methyltransferase | |
Clathrin, light chain A (CLTA) | Chromosome 15 hypothetical ATG/GTP binding protein | |
RAB 32, member of Ras oncogene | Ankyrin repeat domain 17 (ANKRD17) | |
Holocytochrome c synthase (cytochrome c heme-lyase) | Similar to KIAA1824 protein/WD repeat domain 22 | |
Serine protease 23 | Ral guanine nucleotide dissociation stimulator-like 1 (RGL1) | |
Leucine proline-enriched proteoglycan (leprecan)1/prolyl 3-hydroxylase 1 (P3H1) | Acid alpha-glucosidase | |
Spastic paraplegia 3A (autosomal dominant) | ||
Alanine-glyoxylate aminotransferase 2 |