Skip to main content

Table 3 Categorization of genes according to the reported function available from literature

From: Differential gene expression analysis of in vitro duck hepatitis B virus infected primary duck hepatocyte cultures

  FORWARD REVERSE
Membrane proteins Cadherin 11 Transmembrane protein 30A
  Lysosomal-associated membrane protein 1  
  CD9 protein  
  Leucine-rich repeats and calponin homology (CH) domain containing 4  
Cellular Respiration Pyruvate dehydrogenase E1-beta subunit Alpha enolase
  Succinate-CoA ligase, GDP-forming, alpha subunit(SUCLG1) Hydroxyacyl glutathione hydrolase-like
  ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2(ATP5J2) ATPase8, ATPase6 genes for F0-ATP synthase subunit 8, F0-ATP synthase subunit 6
   Cytochrome oxidase subunit I (COI)
Cytoskeletal Filamin B, beta Beta-actin
   T-complex 1
   Microtubule-associated protein RP/EB family, member 1
   Similar to Ankycorbin
Signal Transduction Beta-catenin isolate 3 TRAF interacting protein (TRAIP)
  Quaking homolog, KH domain  
Transcription and Translation High mobility group AT-hook 2 (HMGA2) Splicing factor, arginine/serine-rich 18 (SFRS18)
  High-mobility group box 3 MYST/Esa1-associated factor 6
  Heat shock transcription factor 2 (HSF2) Y box binding protein 1
  CWC22 spliceosome-associated protein homolog Ribosomal protein L35a
  Ubiquitin-like, containing PHD and RING finger domains, 1 (UHRF1) Eukaryotic translation initiation factor 5 (EIF5)
  Nuclear protein Matrin 3 (MATR3)  
  Ribosomal protein L6 (RPL6)  
  Ribophorin I  
Ubiquitin-proteasome Ubiquitin specific peptidase 47 (USP47) Proteasome (prosome, macropain) 26S subunit, ATPase,1 (PSMC1)
  Sequestosome 1  
Apoptosis Tumor necrosis factor receptor superfamily, member 6b, decoy (TNFRSF6B) Caspase 3, apoptosis-related cysteine peptidase (CASP3)
Others Anas platyrhynchos female-specific sequence No significant similarity found
  Junco hyemalis 164 gene, partial sequence UPF0308 protein
  Gallus gallus finished cDNA, clone ChEST457d18 No significant similarity found
  No significant similarity found Gallus gallus finished cDNA, clone ChEST757h13
  Gallus gallus finished cDNA, clone ChEST855m19 Gallus gallus finished cDNA, clone ChEST191i5
  Zebrafish DNA sequence from clone CH211-276C22 in linkage group 6 Gallus gallus BAC clone CH261-189F16 from chromosome z
  Similar to SH3 domain containing 19 Gallus gallus hypothetical protein
  Zinc finger CCCH-type containing 13 (ZC3H13) Gallus gallus similar to MGC53471 protein
  ElaC homolog 2 (E. coli) (ELAC2) Ferritin, heavy polypeptide 1 (FTH1)
  Similar to KIAA2019 protein/AHNAK nucleoprotein 2 Zinc finger CCCH-type, antiviral 1 (ZC3HAV1)
  CLE7 Similar to RGD-CAP
  Cu/Zn superoxide dismutase (SOD1) Versican
  Exonuclease NEF-sp Platelet-activating factor acetylhydrolase isoform Ib, alpha subunit 45kDa (PAFAH1B1)
  Component of oligomeric golgi complex 3 (COG3) Catechol-O-methyltransferase
  Clathrin, light chain A (CLTA) Chromosome 15 hypothetical ATG/GTP binding protein
  RAB 32, member of Ras oncogene Ankyrin repeat domain 17 (ANKRD17)
  Holocytochrome c synthase (cytochrome c heme-lyase) Similar to KIAA1824 protein/WD repeat domain 22
  Serine protease 23 Ral guanine nucleotide dissociation stimulator-like 1 (RGL1)
  Leucine proline-enriched proteoglycan (leprecan)1/prolyl 3-hydroxylase 1 (P3H1) Acid alpha-glucosidase
  Spastic paraplegia 3A (autosomal dominant)  
  Alanine-glyoxylate aminotransferase 2