The presence of tomato leaf curl Kerala virus AC3 protein enhances viral DNA replication and modulates virus induced gene-silencing mechanism in tomato plants

Table 4 List of putative ToLCKeV AC3 interacting DNA and RNA polymerases

Peptide	Protein	Accession Number	Start	Interacting Sequence in Peptide(s)	E-value
WHQSWWAARLGQ	RNA dependant RNA polymerase (RDR1), RDR2	AAN64409.1 NP_192851.1	18	AARLGQ	160
LSPLYPQLLGLA	RDRP3, RDRP5	NP_179581.2	933	LYPQALAL	287
YPTSNIIPSIWS	RDR6	NP_190519.1	55	YPNFEIADTSN I-PSI	66
			1033	DLIPEAW	57117
HISPISAYPWVS	DNA pol γ2	NP_175498.2	17	HLSP SSS--WVS	694
HFKHQHSYARPP	DNA pol ε subunit	AAC77870.1	1855	F MDQHNYA	694
LITNNPGRLPPQ	DNA pol α subunit	AAG52305.1	115	TN KSQRLHP	23644
			588	NPGRL	517
WHKHPHAVFNAR	DNA pol ζ catalytic subunit	AAG52299.1	1460	H RIFNAR	932
YALKHLPESTIP	DNA pol l	NP_172522.2	247	LKHLP	386
GPLLVLNSHSFD	DNA pol δ small subunit	NP_181742.2	311	N PHSFD	386

The details of phage display identified peptides, proteins with the homologous regions, accession number of the proteins, starting co-ordinate of the matching region in the protein sequence, matching sequence in the phage peptide and the E-value of the corresponding match are shown. Residues in bold are identical (or similar in few cases) to the residues in the protein sequence. Mismatches to the protein sequence are shown in reduced font size.

ISSN: 1743-422X