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Table 3 Similarity comparison of nucleotide and amino acid sequences of Asia1/WHN/CHA/06 to other FMDV Asia1 type isolates

From: Isolation, identification and complete genome sequence analysis of a strain of foot-and-mouth disease virus serotype Asia1 from pigs in southwest of China

Asia1/WHN/CHA/06 Nucleotide (amino acid) sequence similarity (%) with Asia1/WHN/CHA/06
  JS/CHA/05 ZB/CHA/58 HNK/CHA/05 IND/321/01 YNBS/58 PAK/1/54
5'UTR 96.8 86.3 84.0 86.7 85.8 84.4
S 95.1 83.3 77.9 83.3 83.3 78.7
5'LF-UTR 98.3 88.5 87.8 89.0 89.0 88.1
FUR 96.5 87.6 88.4 89.9 88.4 88.8
IRES 99.3 89.4 89.0 89.0 86.8 88.5
ORF 98.5 (97.7) 89.8 (94.9) 89.7 (95.7) 89.6 (95.5) 89.7 (95.1) 89.6 (96.3)
L 98.3 (98.5) 84.2 (90.0) 87.7 (95.0) 86.2 (92.5) 83.9 (89.6) 86.7 (96.0)
VP4 99.2 (100.0) 89.8 (97.6) 91.8 (100.0) 90.2(100.0) 89.0 (96.5) 92.2 (98.8)
VP2 98.9 (98.6) 87.4 (92.7) 87.4 (95.0) 86.1 (94.5) 87.5 (93.2) 86.5 (95.4)
VP3 99.7 (100.0) 88.8 (95.9) 86.9 (96.8) 84.4 (96.3) 88.5 (95.9) 87.2 (96.8)
VP1 98.9 (99.1) 85.5 (93.4) 82,1 (89.6) 81.4 (87.7) 84.2 (91.5) 84.0 (87.7)
2A 100.0(100.0) 83.3 (93.8) 95.8 (100.0) 89.6(100.0) 85.6(100.0) 95.8(100.0)
2B 98.5 (98.7) 93.3 (96.1) 93.3 (96.8) 94.4 (97.4) 94.2 (97.4) 91.3 (98.7)
2C 96.6 (97.2) 93.1 (97.2) 91.7 (95.9) 93.1 (96.9) 92.3 (95.9) 92.6 (97.2)
3A 98.7 (98.0) 89.1 (89.5) 89.5 (93.5) 91.3 (94.1) 90.8 (92.8) 88.9 (92.8)
3B 93.4 (95.8) 92.5 (93.0) 97.7 (100.0) 93.4 (97.2) 92.5 (93.0) 93.4 (98.6)
3C 97.5 (99.5) 90.1 (97.2) 92.5 (97.7) 92.5 (97.7) 90.1 (96.7) 90.6 (98.6)
3D 99.1 (99.1) 93.2 (98.1) 93.5 (98.1) 92.6 (97.0) 93.0 (98.1) 93.1 (98.1)
3'UTR 87.1 81.7 87.1 74.2 76.3 87.1
Complete 98.5 90.5 90.3 90.2 90.5 90.3
  1. a The interests of the names of the fragments and data are indicated in boldface.
  2. b Similarity rates of amino acid are shown in brackets.