Table 3 Similarity comparison of nucleotide and amino acid sequences of Asia1/WHN/CHA/06 to other FMDV Asia1 type isolates
Asia1/WHN/CHA/06 | Nucleotide (amino acid) sequence similarity (%) with Asia1/WHN/CHA/06 | |||||
|---|---|---|---|---|---|---|
| Â | JS/CHA/05 | ZB/CHA/58 | HNK/CHA/05 | IND/321/01 | YNBS/58 | PAK/1/54 |
5'UTR | 96.8 | 86.3 | 84.0 | 86.7 | 85.8 | 84.4 |
S | 95.1 | 83.3 | 77.9 | 83.3 | 83.3 | 78.7 |
5'LF-UTR | 98.3 | 88.5 | 87.8 | 89.0 | 89.0 | 88.1 |
FUR | 96.5 | 87.6 | 88.4 | 89.9 | 88.4 | 88.8 |
IRES | 99.3 | 89.4 | 89.0 | 89.0 | 86.8 | 88.5 |
ORF | 98.5 (97.7) | 89.8 (94.9) | 89.7 (95.7) | 89.6 (95.5) | 89.7 (95.1) | 89.6 (96.3) |
L | 98.3 (98.5) | 84.2 (90.0) | 87.7 (95.0) | 86.2 (92.5) | 83.9 (89.6) | 86.7 (96.0) |
VP4 | 99.2 (100.0) | 89.8 (97.6) | 91.8 (100.0) | 90.2(100.0) | 89.0 (96.5) | 92.2 (98.8) |
VP2 | 98.9 (98.6) | 87.4 (92.7) | 87.4 (95.0) | 86.1 (94.5) | 87.5 (93.2) | 86.5 (95.4) |
VP3 | 99.7 (100.0) | 88.8 (95.9) | 86.9 (96.8) | 84.4 (96.3) | 88.5 (95.9) | 87.2 (96.8) |
VP1 | 98.9 (99.1) | 85.5 (93.4) | 82,1 (89.6) | 81.4 (87.7) | 84.2 (91.5) | 84.0 (87.7) |
2A | 100.0(100.0) | 83.3 (93.8) | 95.8 (100.0) | 89.6(100.0) | 85.6(100.0) | 95.8(100.0) |
2B | 98.5 (98.7) | 93.3 (96.1) | 93.3 (96.8) | 94.4 (97.4) | 94.2 (97.4) | 91.3 (98.7) |
2C | 96.6 (97.2) | 93.1 (97.2) | 91.7 (95.9) | 93.1 (96.9) | 92.3 (95.9) | 92.6 (97.2) |
3A | 98.7 (98.0) | 89.1 (89.5) | 89.5 (93.5) | 91.3 (94.1) | 90.8 (92.8) | 88.9 (92.8) |
3B | 93.4 (95.8) | 92.5 (93.0) | 97.7 (100.0) | 93.4 (97.2) | 92.5 (93.0) | 93.4 (98.6) |
3C | 97.5 (99.5) | 90.1 (97.2) | 92.5 (97.7) | 92.5 (97.7) | 90.1 (96.7) | 90.6 (98.6) |
3D | 99.1 (99.1) | 93.2 (98.1) | 93.5 (98.1) | 92.6 (97.0) | 93.0 (98.1) | 93.1 (98.1) |
3'UTR | 87.1 | 81.7 | 87.1 | 74.2 | 76.3 | 87.1 |
Complete | 98.5 | 90.5 | 90.3 | 90.2 | 90.5 | 90.3 |