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Table 1 Primer sets used in this study

From: Full sequence analysis and characterization of the South Korean Norovirus GII-4 variant CUK-3

  Primer Sequence (5'→ 3') Polarity Regiona
Diagnosis primer sets GIF1M CTG CCC GAA TTY GTA AAT GAT GAT + 5342-5365
  GIRIM CCA ACC CAR CCA TTR TAC ATY TG - 5649-5671
  GIIF1M GGG AGG GCG ATC GCA ATC T + 5049-5067
  GIIRIM CCR CCI GCA TRI CCR TTR TAC AT - 5367-5389
Designed primer sets ORF1-1F GTG AAT GAA GAT GGC GTC TAA C + 1-22
  ORF1-1R AGT TCC ACT GCA AGG TCC TCA G - 999-1020
  ORF1-2F CTG AGG ACC TTG CAG TGG AAC T + 999-1020
  ORF1-2R ATG AGG GAA CCA GTG GTG AGA GT - 2018-2040
  ORF1-3F CGT GCT CGA GGC GCA TCG ATT T + 1821-1842
  ORF1-3R TTG TAC TCA TCA TAC TCT TCA - 2701-2721
  ORF1-4F CAT TGC TCG AGC ATC AGG GCT AC + 2038-2060
  ORF1-4R TTG ACT ATC CTC GAC CAG ATG CT - 3038-3060
  ORF1-5F AGC ATC TGG TCG AGG ATA GTC AA + 3038-3060
  ORF1-5R GTG GCA CAT ATG ACA GTG TTT CC - 3518-3540
  ORF1-6F GGA AAC ACT GTC ATA TGT GCC AC + 3518-3540
  ORF1-6R CAG TCG TTC TTC CGC ATG TGG TGC GG - 3935-3960
  ORF1-7F CTC AGC ACC AAG ACT AAA TTC TGG A + 3635-3659
  ORF1-7R TGG GCG ATG GAA TTC CAT TGA GAG G - 4485-4509
  ORF1-8F ATG GTT AAA TTC TCC CCA GAA CC + 4355-4377
  ORF1-8R CCA CCT GCA TAA CCA TTG TAC AT - 5367-5389
  ORF2-F ATG AAG ATG GCG TCG AAT GGC + 5085-5105
  ORF2-R TTA TAA TGC ACG CCT GCG CCC CGT - 6681-6704
  ORF3-F ATG GCT GGA GCT TTC TTT GCT + 6704-6724
  ORF3-R AAA GAC ACT AAA GAA AGG AAA GAT - 7532-7555
  1. a Each of sequence number of primer sets region is indicated with Lordsdale strain (X86557) except that of GIF1M and GIR1M set indicated with Norwalk strains (M87661).