Table 1 Primer sets used in this study
From: Full sequence analysis and characterization of the South Korean Norovirus GII-4 variant CUK-3
|  | Primer | Sequence (5'→ 3') | Polarity | Regiona |
|---|---|---|---|---|
Diagnosis primer sets | GIF1M | CTG CCC GAA TTY GTA AAT GAT GAT | + | 5342-5365 |
| Â | GIRIM | CCA ACC CAR CCA TTR TAC ATY TG | - | 5649-5671 |
| Â | GIIF1M | GGG AGG GCG ATC GCA ATC T | + | 5049-5067 |
| Â | GIIRIM | CCR CCI GCA TRI CCR TTR TAC AT | - | 5367-5389 |
Designed primer sets | ORF1-1F | GTG AAT GAA GAT GGC GTC TAA C | + | 1-22 |
| Â | ORF1-1R | AGT TCC ACT GCA AGG TCC TCA G | - | 999-1020 |
| Â | ORF1-2F | CTG AGG ACC TTG CAG TGG AAC T | + | 999-1020 |
| Â | ORF1-2R | ATG AGG GAA CCA GTG GTG AGA GT | - | 2018-2040 |
| Â | ORF1-3F | CGT GCT CGA GGC GCA TCG ATT T | + | 1821-1842 |
| Â | ORF1-3R | TTG TAC TCA TCA TAC TCT TCA | - | 2701-2721 |
| Â | ORF1-4F | CAT TGC TCG AGC ATC AGG GCT AC | + | 2038-2060 |
| Â | ORF1-4R | TTG ACT ATC CTC GAC CAG ATG CT | - | 3038-3060 |
| Â | ORF1-5F | AGC ATC TGG TCG AGG ATA GTC AA | + | 3038-3060 |
| Â | ORF1-5R | GTG GCA CAT ATG ACA GTG TTT CC | - | 3518-3540 |
| Â | ORF1-6F | GGA AAC ACT GTC ATA TGT GCC AC | + | 3518-3540 |
| Â | ORF1-6R | CAG TCG TTC TTC CGC ATG TGG TGC GG | - | 3935-3960 |
| Â | ORF1-7F | CTC AGC ACC AAG ACT AAA TTC TGG A | + | 3635-3659 |
| Â | ORF1-7R | TGG GCG ATG GAA TTC CAT TGA GAG G | - | 4485-4509 |
| Â | ORF1-8F | ATG GTT AAA TTC TCC CCA GAA CC | + | 4355-4377 |
| Â | ORF1-8R | CCA CCT GCA TAA CCA TTG TAC AT | - | 5367-5389 |
| Â | ORF2-F | ATG AAG ATG GCG TCG AAT GGC | + | 5085-5105 |
| Â | ORF2-R | TTA TAA TGC ACG CCT GCG CCC CGT | - | 6681-6704 |
| Â | ORF3-F | ATG GCT GGA GCT TTC TTT GCT | + | 6704-6724 |
| Â | ORF3-R | AAA GAC ACT AAA GAA AGG AAA GAT | - | 7532-7555 |