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Table 3 The Homology of nucleotide sequences of LTR, gag, pol and env genes between SCDY1 and other reference strains

From: Sequence analysis for the complete proviral genome of subgroup J Avian Leukosis virus associated with hemangioma: a special 11 bp deletion was observed in U3 region of 3'UTR

ALV-J strains* genes or fragment of SCDY1
Name LTR gag pol env
HPRS-103 92.7 96.3 97.3 94.2
YZ9902 90.1 95.5 97.2 93.6
ADOL-7501 90.4 94.8 97.4 90.3
NX0101 90.4 94.3 97.4 92.9
NM2002-1 91.1 95.7 96.9 92.7
JS-nt 91.7 96.0 96.9 92.9
SD07LK1 89.8 96.2 97.6 93.7
NHH 91.4 96.5 96.6 94.2
HN^ 92.7 --- --- ---
HAY013 89.8 95.5 97.1 93.6
JS09GY3 91.1 95.3 97.3 93.8
JS09GY6 90.8 95.2 97.1 94.0
  1. * pathotype of isolates was available in table2; ^ means strain with only LTR sequence was available; "---" means no result could be obtained.