Table 1 Sequence homology of whole genome of three H4 isolates in this study compared to nucleotide sequences available in GenBank database.
From: Genetic characterization of avian influenza subtype H4N6 and H4N9 from live bird market, Thailand
a). A/DK/THA/CU-LM1973/09 (H4N6) | ||||
|---|---|---|---|---|
Gene | Position | Virus with the highest percentage of nucleotide identity | Genbank accession # | % nucleotide identity |
PB2 | 1-2239 | A/duck/Hokkaido/Vac-3/2007(H5N1) | AB355926.1 | 98% |
PB1 | 1-2271 | A/mallard/Hokkaido/24/2009(H5N1) | AB530990.1 | 98% |
PA | 39-2133 | A/environment/Dongting Lake/Hunan/3-9/2007(H10N8) | GQ325646.1 | 99% |
HA | 1-1679 | A/duck/Taiwan/wb1104/2006(H4N6) | GU066565.1 | 97% |
NP | 1-1462 | A/duck/Thailand/AY-354/2008(H3N2) | FJ802402.1 | 97% |
NA | 1-1405 | A/duck/Eastern China/01/2007(H4N6) | EU429790.1 | 97% |
M | 1-982 | A/gull/Astrakhan/1846/1998(H13N6) | GU052229.1 | 99% |
NS | 1-817 | A/teal/Egypt/912908/2005(H10N7) | EU599315.1 | 98% |
b) A/Dk/THA/CU-LM1983/09 (H4N6) | ||||
Gene | Position | Virus with the highest percentage of nucleotide identity | Genbank accession # | % nucleotide identity |
PB2 | 1-2211 | A/migratory duck/Hong Kong/MP206/2004(H5N2) | EF597476.1 | 97% |
PB1 | 1-2265 | A/mallard/Hokkaido/24/2009(H5N1) | AB530990.1 | 98% |
PA | 9-2133 | A/environment/Dongting Lake/Hunan/3-9/2007(H10N8) | GQ325646.1 | 98% |
HA | 1-1682 | A/duck/Taiwan/wb1104/2006(H4N6) | GU066565.1 | 97% |
NP | 1-1462 | A/duck/Thailand/AY-354/2008(H3N2) | FJ802402.1 | 98% |
NA | 1-1406 | A/duck/Eastern China/01/2007(H4N6) | EU429790.1 | 97% |
M | 1-982 | A/gull/Astrakhan/1846/1998(H13N6) | GU052229.1 | 99% |
NS | 1-821 | A/teal/Egypt/912908/2005(H10N7) | EU599315.1 | 99% |
c) A/Dk/THA/CU-LM1984/09 (H4N9) | ||||
Gene | Position | Virus with the highest percentage of nucleotide identity | Genbank accession # | % nucleotide identity |
PB2 | 55-2212 | A/migratory duck/Hong Kong/MP206/2004(H5N2) | EF597476.1 | 97% |
PB1 | 5-2271 | A/mallard/Hokkaido/24/2009(H5N1) | AB530990.1 | 98% |
PA | 9-2133 | A/environment/Dongting Lake/Hunan/3-9/2007(H10N8) | GQ325646.1 | 99% |
HA | 1-1684 | A/duck/Taiwan/wb1104/2006(H4N6) | GU066565.1 | 97% |
NP | 1-1470 | A/duck/Thailand/AY-354/2008(H3N2) | FJ802402.1 | 98% |
NA | 24-1377 | A/duck/Mongolia/119/2008(H7N9) | AB481213.1 | 97% |
M | 1-955 | A/gull/Astrakhan/1846/1998(H13N6) | GU052229.1 | 99% |
NS | 1-818 | A/teal/Egypt/912908/2005(H10N7) | EU599315.1 | 99% |