Analysis of a new strain of Euphorbia mosaic virus with distinct replication specificity unveils a lineage of begomoviruses with short Rep sequences in the DNA-B intergenic region

Table 2 Percentages of sequence identities between EuMV-Jal and selected begomoviruses (DNA and predicted proteins*)

	DNA-A	IR-A	CP*	AC1*	AC2*	AC3*	AC4*	DNA-B	IR-B	BV1*	BC1*
Virus
ACMV	45	25	66	49	43	42	19	27	22	24	41
BCaMV	76	50	92	86	78	77	64	55	28	73	83
BGYMV	64	37	91	63	70	78	11	48	22	67	80
CdTV	67	43	92	63	67	78	30	51	27	71	78
CoYVV	51	24	87	43	51	43	19	41	22	52	71
CuLCrV	77	46	91	83	71	71	72	51	27	66	76
DesLDV	72	44	91	80	66	73	58	50	23	64	77
EuMPV	77	52	93	86	81	76	58	-	-	-	-
EuYMV	77	51	90	85	80	76	62	52	35	73	82
EuMV-JM	95	91	98	97	97	95	88	86	73	96	98
EuMV-PR	92	82	99	96	93	91	91	-	-	-	-
EuMV-YP	92	80	99	93	93	91	87	85	63	94	98
PepGMV	72	50	90	80	71	75	14	48	25	64	74
PHYVV	59	33	89	49	50	63	12	47	25	66	74
RhGMYV	76	54	94	86	70	70	66	51	31	69	78
SLCV	78	57	94	82	72	80	77	50	30	63	80
ToCoMV-BZ	73	43	90	85	64	72	57	52	31	63	77
TMYLCAV	84	66	95	88	87	80	82	56	43	75	83
TYLCTHV	48	28	68	48	43	39	22	25	19	21	39

ISSN: 1743-422X