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Figure 1 | Virology Journal

Figure 1

From: Analysis of a new strain of Euphorbia mosaic virus with distinct replication specificity unveils a lineage of begomoviruses with short Rep sequences in the DNA-B intergenic region

Figure 1

Comparison of CR sequences from EuMV and relatives. The alignments of the CR sequences of both (A) DNA-A and (B) DNA-B components from EuMV isolates and related begomoviruses from South America are shown to highlight similarities and differences in relevant cis-acting elements. Putative Rep-binding elements (iterons) are shaded in yellow and their relative orientation is depicted by black arrows; the sequence with the potential to form a stem-loop structure is highlighted in black and underlined. The TATA box of the leftward promoter is shaded in blue. The G-box element is shown in red letters, and the "GYA box" conserved in members of the SLCV clade is represented in green letters. (C) Differences in the nucleotide sequence of the iterons and the amino acid sequence of the Rep-IRD of EuMV-Jal and relatives are highlighted. Virus acronyms and GenBank accession numbers are listed in Table 1.

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Virology Journal

ISSN: 1743-422X