Skip to main content

Table 1 Primers used in this study.

From: Full genome comparison and characterization of avian H10 viruses with different pathogenicity in Mink (Mustela vison) reveals genetic and functional differences in the non-structural gene

Gene

Primer name

Primer sequence (5'-3')

PB2

PB2-F1

TATTGGTCTCAGGGAGCGAAAGCAGGTC

 

PB2-R1

TCYTCYTGTGARAAYACCAT

 

PB2-F2

TAYGARGARTTCACAATGGT

 

PB2-R2

ATATGGTCTCGTATTAGTAGAAACAAGGTCCTTT

PB1

PB1-F1

TATTCGTCTCAGGGAGCGAAAGCAGGCA

 

PB1-R1

TTRAACATGCCCATCATCAT

 

PB1-F2

ARATACCNGCAGARATGCT

 

PB1-R2

ATATCGTCTCGTATTAGTAGAAACAAGGCATTT

PA

PA-F1

TATTCGTCTCAGGGAGCGAAAGCAGGTAC

 

PA-R1

TNGTYCTRCAYTTGCTTATCAT

 

PA-F2

CATTGAGGGCAAGCTTTC

 

PA-R2

ATATCGTCTCGTATTAGTAGAAACAAGGTACTT

HA

HA-F1

GCAAAGCAGGGGTCACAATGTCA

 

HAR1

TCTGAATCAGCCATGTCAATTGT

 

HA-F2

GATTTCCATTGGACGATGGTACAACCA

 

HA-R2

GGGTGTTTTTAACTAAATACAGATTGTGC

NP

NP-1F

AGCRAAAGCAGGGTDKATA

 

NP-1R

CYARTTGACTYTTRTGTGCTGG

 

NP-2F

TAYGACTTTGARAGAGAAGG

 

NP-2R

AGTAGAAACAAGGGTATTTT

NA

N4-F

AGCAAAAGCAGGAGTTTCATAATGA

 

N4-R

CATGGCCCGATGGCGCTCTGTTG

 

N7-F

GTGATCGAGAATGAATCCAAATCAGA

 

N7-R

GCATTTTACGAAAAGTATTGGATTTG

M

M-F

AGCRAAAGCAGKTAG

 

M-R

AGTAGAAACAAGGTARKTTTT

NS

NS-F

CAAAAACATAATGGATYCCAACACK

 

NS-R

ATTAAATAAGCTGAAAMGAGA A