Table 2 Segment 6 highly polymorphic region (HPR) groups among the new Chile ISAV strains
HPR group | No. of isolates sequenced1 | Percent of total |
|---|---|---|
HPR 7b | 192 | 79.7% |
HPR 7c | 1 | 0.4% |
HPR 7e | 1 | 0.4% |
HPR 7f | 3 | 1.2% |
HPR 7g | 1 | 0.4% |
HPR 7h | 1 | 0.4% |
HPR 7i | 2 (1 was mixed with HPR 7b) | 0.8% |
HPR 1b | 1 | 0.4% |
HPR 1c | 7 | 2.9% |
HPR 2 | 10 | 4.1% |
HPR 2c | 1 (mixed with HPR 2) | 0.4% |
HPR 2d | 1 | 0.4% |
HPR 3 | 6 | 2.5% |
HPR 3a | 1 | 0.4% |
HPR 4c | 3 (2 were mixed with HPR 7b) | 1.2% |
HPR 5 | 2 | 0.8% |
HPR 5c | 1 | 0.4% |
HPR 9b | 2 | 0.8% |
HPR 15 | 1 | 0.4% |
HPR 15b | 1 | 0.4% |
HPR 15c | 1 (mixed with HPR 7b) | 0.4% |
HPR 15d | 1 | 0.4% |
HPR 15e | 1 | 0.4% |
New HPR (12-aa deletion) | 5 | 2.1% |
HPR0 | 1 (mixed with HPR 7b) | 0.4% |