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Table 3 Oligonucleotide sequences of primers and probes used in AHV-1 FQ-PCR detection

From: Development of TaqMan® MGB fluorescent real-time PCR assay for the detection of anatid herpesvirus 1

Name

Type

Sequences (5'to 3')

Length (nt)

Position

Amplicon size (bp)

Real-Fa

Forward

ttttcctcctcctcgctgagt

21

357–377

60

Real-Pa

Probe

ccctgggtacaagcgc

16

383–398

 

Real-Ra

Reverse

ggccgggtttgcagaagt

18

399–416

 

Con-Fb

Forward

ggacagcgtaccacagataa

20

246–265

498

Con-Rb

Reverse

acaaatcccaagcgtag

17

727–743

 

IC-Fc

Forward

acgagcgcaacccttga

17

1054–1070

92

IC-Pc

Probe

cggtttgtcaccggcagtcacct

23

1103–1125

 

IC-Rc

Reverse

acgtcatccccaccttact

19

1127–1145

 
  1. a Based on the nucleotide sequence AF064639.
  2. b Based on the nucleotide sequence AF064639.
  3. c Based on the nucleotide sequence AJ971894.