Molecular characterization of the Great Lakes viral hemorrhagic septicemia virus (VHSV) isolate from USA

Table 5 Percent (%) nucleotide or deduced amino acid sequence identity of the VHSV strain MI03GL with other rhabdoviruses

Rhabdoviruses	3'UTR^¥	N	P	M	G	NV	L	5'UTR^¥	Complete genome^¥
BEFV	39	8	12	8	13	NA	13	36	32
Cereal	27	11	9	8	10	NA	13	28	30
Bat	38	9	11	10	18	NA	15	32	35
Maize Fine streak	31	8	8	10	7	NA	13	32	30
Lettuce	27	11	11	8	8	NA	12	38	30
MMV	30	10	14	10	8	NA	13	25	32
Mokola	41	10	8	12	19	NA	14	38	34
OFV	27	8	7	2	7	NA	13	32	NA
Rabies	38	10	11	9	16	NA	15	34	35
Siniperca	34	8	7	8	13	NA	15	30	31
SVC	35	9	8	5	17	NA	14	35	34
SYNV	29	8	12	9	6	NA	13	22	30
Taro	26	10	12	9	10	NA	14	33	32
Tupaia	30	9	8	10	14	NA	15	44	31
VSV	38	9	8	5	13	NA	15	32	34
IHNV	35	40	35	36	38	16	60	35	56
HIRRV	32	39	34	38	38	17	59	34	56
SHRV	52	46	42	45	48	16	65	37	62

^¥ Only nucleotide sequences were used for analysis
NA, not applicable
BEFV, Bovine ephemeral fever virus; Bat, European bat lyssavirus; MMV, Maize mosaic virus; Cereal, Northern cereal mosaic virus; Lettuce, Lettuce necrotic yellows virus; OFV, Orchid fleck virus; SYNV, Sonchus yellow net virus; SVC, Spring viremia of carp virus; Taro vein chlorosis virus (Taro); VSV, Vesicular stomatitis virus; IHNV, Infectious hematopoietic necrosis virus; HIRRV, Hirame rhabdovirus; SHRV, Snakehead rhabdovirus.
-Viruses belonging to Novirhabdovirus genus are in bold letters

ISSN: 1743-422X