Skip to main content

Table 18 Effect of variant amino acids on CTL epitope corresponding to residues 18–26 of Vpr

From: A comprehensive analysis of the naturally occurring polymorphisms in HIV-1 Vpr: Potential impact on CTL epitopes

Amino Acid Sequence of Predicted Epitope Scoreβ
Prototype sequence (start position 18)α  
WMLDLLEDL 1,213.356
Natural variations observed at this epitope  
GMLDLLEDL 263.773
RMLDLLEDL 263.773
WALDLLEDL 23.334
WILDLLEDL 231.004
WLLDLLEDL 1,680.031
WPLDLLEDL 10.967
WRLDLLEDL 0.233
WSLDLLEDL 10.967
WVLDLLEDL 147.003
WTLDLLEDL 23.334
WMIDLLEDL 327.934
WMMDLLEDL 1,213.356
WMVDLLEDL 327.934
WMLALLEDL 295.940
WMLELLEDL 1,213.356
WMLGLLEDL 295.940
WMLKLLEDL 295.940
WMLTLLEDL 295.940
WMLDLSEDL 527.546
WMLDLVEDL 1,213.356
WMLDLLDDL 1,213.356
WMLDLLGDL 321.911
WMLDLLKDL 2,476.237
WMLDLLQDL 2,476.237
WMLDLLRDL 495.247
WMLDLLEDF 4.233
WMLDLLEDI 592.569
  1. α Accession No.: A1.TZ.01.A341_AY253314
  2. β Estimate of Half Time of Disassociation of a Molecule Containing This Epitope