Table 2 The difference between complete M segment of CCHFV strain Kosova Hoti and other strains in the V. group (Europe/Turkey) calculated by the MegAlign module. Table includes a separate column for the Mucin-like variable region present in M segment.
M segment, difference (%) | Kosova Hoti | ||||
|---|---|---|---|---|---|
CCHFV strain | nt sequence (complete) | nt sequence (ORF) | aa sequence | non- synonymous mutations (%) | Mucin-like VR, aa 28–251 (% difference) |
Kosovo, 9553-01 | 2.3 | 2.2 | 1.9 | 86 | 4.5 |
Turkey, 200310849 | 5.7 | 5.6 | 4.8 | 85 | 20.5 |
Russia, Drosdov | 5.2 | 5.1 | 4.3 | 84 | 15.2 |
Russia, Kashmanov | 5.4 | 5.2 | 4.5 | 86 | 19.6 |
Russia, VLV-100 | 5.7 | 5.4 | 4.5 | 83 | 20.1 |