Table 2 Number of nucleotide and amino acid substitutions and Ka/Ks ratio of Malaysian CAV isolates
From: Detection and characterization of chicken anemia virus from commercial broiler breeder chickens
CAV isolates | *No. of Nucleotide Substitutions | *No. of amino acid Substitutions | non-synonymous substitution rate (K A ) | Synonymous substitution rate (K S ) | Omega value (K A /K S ) | References |
|---|---|---|---|---|---|---|
MF1A | 28 | 6 | 0.017 | 0.199 | 0.08 | This study |
MF3C | 30 | 6 | 0.017 | 0.225 | 0.07 | This study |
M3B5 | 27 | 6 | 0.017 | 0.191 | 0.09 | This study |
NF4A | 27 | 7 | 0.020 | 0.179 | 0.11 | This study |
P12B | 27 | 6 | 0.017 | 0.187 | 0.09 | This study |
P24A | 18 | 6 | 0.017 | 0.191 | 0.09 | This study |
PPW4 | 12 | 7 | 0.020 | 0.039 | 0.50 | This study |
NF1D | 13 | 6 | 0.017 | 0.053 | 0.33 | This study |
NF2C | 13 | 6 | 0.017 | 0.055 | 0.31 | This study |
NF3A | 11 | 4 | 0.012 | 0.047 | 0.25 | This study |
PYT4 | 11 | 5 | 0.015 | 0.042 | 0.35 | This study |
M1B1 | 9 | 4 | 0.012 | 0.036 | 0.32 | This study |
SMSC-1 | 26 | 5 | 0.017 | 0.187 | 0.09 | [13] |
3-1 | 8 | 4 | 0.011 | 0.060 | 0.19 | [13] |
BL-5 | 4 | 3 | 0.009 | 0.006 | 1.50 | [12] |