Skip to main content

Advertisement

Table 1 Values for (non-)synonymous mutational rates and dN/dS ratios in astrovirus genes

From: Different rates of (non-)synonymous mutations in astrovirus genes; correlation with gene function

Species ORF1a ORF1b ORF2
TipBranche AccNum dN dS dN/dS dN dS dN/dS dN dS dN/dS
Human1 Z25771 0.0040 0.0445 0.0899 0.0026 0.0775 0.0335 0.0049 0.0503 0.0974
Human1 L23513 0.0031 0.0228 0.1360 0.0000 0.0130 0.0000 0.0057 0.0386 0.1477
Human2 L13745 0.0047 0.0514 0.0914 0.0086 0.1326 0.0649 0.1334 0.8681 0.1537
Human3 AF141381 0.0085 0.2177 0.0390 0.0143 0.3686 0.0388 0.0415 0.5710 0.0727
Human4 DQ070852 0.0068 0.2338 0.0291 0.0033 0.1517 0.0218 0.1564 0.5992 0.2610
Human5 DQ028633 0.0122 0.1390 0.0878 0.0061 0.1872 0.0326 0.0959 0.7401 0.1296
Human6 Z46658        0.0876 0.7478 0.1171
Human7 Y08632        0.0582 0.5862 0.0993
Human8 AF260508 0.0075 0.1508 0.0497 0.0033 0.1802 0.0183 0.0536 0.4412 0.1215
Sheep Y15937 0.3386 28.9094 0.0117 0.1369 8.2335 0.0166 0.2367 46.6085 0.0051
Mink AY179509 0.2348 24.9745 0.0094 0.1357 32.7666 0.0041 0.2994 28.4143 0.0105
Cat AF056197        0.1262 0.6628 0.1904
Pig AB037272        0.2204 28.9632 0.0076
Turkey1 Y15936 0.3483 37.4061 0.0093 0.2029 18.8746 0.0107 0.1717 30.1582 0.0057
Turkey2 AF206663 0.2821 11.8241 0.0239 0.1604 11.5272 0.0139 0.3652 20.9202 0.0175
ANV AB033998 0.3863 25.2068 0.0153 0.1692 41.9092 0.0040 0.1007 1.3416 0.0751
ANV2 AB046864 0.1208 1.0567 0.1143       
  1. The virus isolates available for analysis of ORF1a, ORF1b and ORF2 are mentioned in the first column and specified by their accession numbers. With respect to ORF2, one representative per human serotype was included. Separate values for dN and dS of the species' tip branches as well as their ratios are presented for each ORF, individually. Values for dN/dS exceeding 0.15 are in italics. Ancestral branches were not included.