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Table 2 Prediction of coreceptor usage by Position Specific Scoring Matrix (PSSM) bioinformatics tool that predicts coreceptor usage.

From: Role of HIV-1 subtype C envelope V3 to V5 regions in viral entry, coreceptor utilization and replication efficiency in primary T-lymphocytes and monocyte-derived macrophages

Patient/Clone Software Score Pred X4 pct R5 pct Geno Pos chg Net Chg Percent
AP.17/171, 173 X4/R5 -3.58 0 0.47 0.98 SE 6 4 0.83
  Sinsi -7.05 0 0.04 0.90 SE 6 4 0.83
AP.18/182, 183 X4/R5 -6.48 0 0.27 0.95 SD 6 4 0.70
  Sinsi -10.73 0 0.04 0.58 SD 6 4 0.70
AP.2/221A X4/R5 -7.83 0 0.22 0.9 SD 7 5 0.57
  Sinsi -9.5 0 0.04 0.73 SD 7 5 0.57
AP.28/282, 284 X4/R5 -8.89 0 0.22 0.88 SE 7 5 0.44
  Sinsi -12.12 0 0.01 0.2 SE 7 5 0.44
AP.33/331, 334 X4/R5 -7.36 0 0.24 0.92 SE 6 4 0.62
  Sinsi -10.61 0 0.04 0.51 SE 6 4 0.62
AP.4/452, 454 X4/R5 -6.50 0 0.27 0.95 SD 5 2 0.67
  Sinsi -11.53 0 0.01 0.32 SD 5 2 0.67
AP.5/512, 514 X4/R5 -9.74 0 0.22 0.82 SE 5 3 0.33
  Sinsi -10.69 0 0.01 0.50 SE 5 3 0.33
AP.6/639 X4/R5 -9.06 0 0.22 0.86 SD 6 4 0.48
  Sinsi -12.26 0 0.01 0.17 SD 6 4 0.48
AP.10/1011, 1014 X4/R5 -9.36 0 0.22 0.83 SE 6 4 0.31
  Sinsi -11.16 0 0.01 0.04 SE 6 4 0.31