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Table 1 Nucleotide and amino acid sequences adjacent to cleavage sites in Gag (HXB2) [2]

From: Imperfect DNA mirror repeats in the gag gene of HIV-1 (HXB2) identify key functional domains and coincide with protein structural elements in each of the mature proteins

Segment

 

DNA

Amino Acid

 

nt

start..stop

start..stop

gag thru slip

1296

1-atgggtgcg..gctaat-1296

1-MGARAS..ERQAN-432

matrix

396

1-atgggtgcg..aattac-0396

1-MGARAS..VSQNY-132

capsid

693

397-cctata..gttttg-1089

133-PIVQN..KARVL-363

p2

42

1090-gctgaa..ataatg-1131

364-AEAMS..SATIM-377

p7 nucleocapsid

162

1132-atgcag..gctaat-1296

378-MQRGN..ERQAN-432

p1 start is slip

48

1297-ttttta..aatttt-1344

433-FLGKI..RPGNF-448

p6

159

1345-cttcag..caataa-1503

449-LQSRP..DPSSQ$-501

gag-pol TF

165

1299-tttagg..aacttc-1463

433-FREDL..VSFNF-488