Comparative genomic analysis of the family Iridoviridae: re-annotating and defining the core set of iridovirus genes

Eaton, Heather E; Metcalf, Julie; Penny, Emily; Tcherepanov, Vasily; Upton, Chris; Brunetti, Craig R

doi:10.1186/1743-422X-4-11

Virology Journal

Table 3 Re-annotation of FV3, TFV, and ATV of the Ranavirus genus

From: Comparative genomic analysis of the family Iridoviridae: re-annotating and defining the core set of iridovirus genes

FV3^a	Start	Stop^c	aa^d	TFV^a	Start	Stop^c	aa^d	ATV^a	Start	Stop^c	aa^d
1R	272	1042	256	105R	103809	104576	256	91R	104836	105606	256
2L	2611	1649	320	2L ^b	1028	315/11	237	1L	981	70	303
2.5L	3488	2649	279	2.5L	1943	1065	292	2L	1858	1019	279
3R	3418	4734	438	4R	1937	3151	404	3R	1892	3106	404
4R	4775	4957	60	5R	3190	3372	60	4R	3149	3331	60
5R	5390	6004	204	6R	3816	4418	200	-	-	-	-
6R	6007	6234	75	-	-	-	-	-	-	-	-
-	-	-	-	6.5R	4411	4578	55	-	-	-	-
7.5L	7025	7411	128	7L	5452	5024	142	5L	4416	3994	140
8R	7503	11384	1293	8R	5531	9415	1294	6R	4495	8379	1294
9L	14599	11753	948	9L	12599	9753	948	7L	11725	8879	948
10R	14615	15028	137	10R	12615	13028	137	8R	11741	12154	137
11R	15378	15590	70	11R	13380	13592	79	88L	102924	102712	70
12L	16549	15656	297	12L	14551	13658	297	87R	101753	102646	297
-	-	-	-	13L	14947	14747	66	86R	101169	101363	64
13R	17090	17296	68	14.5R ^b	15041	15184/15247	47	85.5L	101128	100871	85
14R	17311	17670	119	15R	15261	15620	119	84L	100856	100482	124
15R	17766	18734	322	16R	15716	16663	315	83R	100400	99474	308
16R	19014	19841	275	17R	16838	17665	275	82.5L	98809	98438	123
17L	21590	20082	502	18L	19414	17906	502	81R	96410	97918	502
18L	21864	21628	78	18.5L	19687	19451	78	80.5R	96137	96373	78
19R	21916	24471	851	19R	19686	22271	861	80L	96083	94086	665
20R	24519	24965	148	20R	22319	22774	151	79L	94038	93589	149
21L	25861	25202	219	21L	23657	23998	219	78R	92383	93042	219
22R	25991	28912	973	22R	23789	26716	975	77L	92253	89326	975
23R	29290	30438	382	23R	27093	28241	382	53R	58082	59230	382
24R	30821	31918	365	24R	28636	29733	365	54R	59613	60710	365
25R	32112	32900	262	25R	29930	30709	259	55R	62328	63335	335
-	-	-	-	26R	30778	30936	52	56R	63402	63500	32
26R ^b	32967	33197	76	27R	31033	31812	259	57R	63659	64438	259
-	-	-	-	28L	32190	32002	62	-	-	-	-
27R	33728	36640	970	29R	32345	35257	970	58R	64968	67880	970
28R	36689	37177	162	30R	35306	35794	162	59R	67929	68417	162
29L	37652	37356	98	31L	36122	35823	99	-	-	-	-
30R	37854	38006	50	-	-	-	-	-	-	-	-
31R	38068	38487	139	32R	36565	36984	139	60R	68786	69205	139
32R	38537	40426	629	33R	37098	39047	649	61R	69255	71471	738
33R	40509	40700	63	34R	39133	39324	63	62R	71555	71746	63
34R	40844	41164	106	35.5R	39467	39787	106	62.5R	71894	72235	113
35L	41717	41256	153	37L	40308	39772	178	63L	72576	72220	118
36L	42353	41256	365	38.5L ^b	40938	40543/40367	131	-	-	-	-
-	-	-	-	39R	41112	41246	44	-	-	-	-
37R	42749	43378	209	40R	41296	41952	218	64R	74110	74739	209
38R	43519	45216	565	41R	42091	43788	565	65R	74878	76575	565
39R	45322	45672	116	42R	43899	44249	116	66R	76682	76948	88
40R	45761	46309	182	43R	44335	44883	182	67R	77048	77671	207
-	-	-	-	44R	44973	45239	88	68R	77899	78039	46
41R	46691	50188	1165	45R	45270	48767	1165	69R	78111	81608	1165
43.5L ^b	50940	51455/5684	171	46L	50362	49133	409	70L	82913	82152	253
45L	52348	51938	136	47L	50899	50489	136	71L	83450	83040	136
46L	52968	52723	81	48L	51411	50953	152	72L	84331	83504	275
47L	53509	53093	138	49L	51953	51537	138	73L	84874	84458	138
48L	53763	53512	83	50L	52207	51956	83	74L	85187	84804	127
49L	54621	53872	249	51L	52899	52315	194	75L	86776	85235	513
50L	55459	54770	229	52L	53876	53136	246	-	-	-	-
51R	55539	57224	561	53R	53956	55641	561	76R	86858	88543	561
52L	58548	57481	355	54L	56965	55898	355	52R	57441	57602	53
53R	58886	60454	522	55R	57301	58869	522	51L	57102	55522	526
54L	60899	60669	76	-	-	-	-	-	-	-	-
55L	62232	60937	431	56L	60615	59320	431	50R	53770	55065	431
-	-	-	-	57L	60772	60623	49	49R	53613	53762	49
56R	62320	62757	145	58R	60809	61213	134	48L	53576	53172	134
57R	62871	64367	498	59R	61254	62750	498	47L	53130	51634	498
-	-	-	-	60L	62888	62757	43	-	-	-	-
58.5R	64819	65373	184	61R	63264	63818	184	46L	50770	50216	184
59L	67014	65956	352	62L	65445	64387	352	45R	48676	49734	352
60R	67176	70217	1013	63R	65605	68646	1013	44L	48512	45471	1013
61L	70408	70226	60	-	-	-	-	-	-	-	-
-	-	-	-	64R	69029	69151	40	-	-	-	-
62L	74516	70851	1221	65L	72940	69281	1219	43R	41447	45112	1221
62.5R	74515	74778	87	66.5R	72927	73202	91	42.5L	41460	41185	91
63R	74895	75389	164	68R	73319	73813	164	42L	41068	40631	145
64R	75529	75816	95	69.5R	73946	74209	87	40L	40492	40205	95
65L	76373	76209	54	-	-	-	-	-	-	-	-
66L	76921	76370	183	70.5L	75301	74685	204	38.5R	39094	36681	195
67L	78139	76976	387	71L	76525	75362	387	38R	37876	39039	387
68R	78422	78709	95	72R	76785	76982	65	37bL	37592	37416	58
-	-	-	-	73L	77175	77020	51	36R	36736	36891	51
69R	78845	79111	88	74R	77244	77507	88	35L	36677	36411	88
70R	79129	79503	124	75R	77507	77902	131	34.5L	36392	36018	124
71R	79543	79776	77	76R	77942	78175	77	34L	35978	35742	78
72L	80549	79833	238	77L	78948	78232	238	32R	34970	35293	107
73L	81971	80997	324	78L	80299	79325	324	31R	33319	34311	330
74L	83258	82146	370	79L	81498	80506	330	30R	31947	33128	393
75L	83544	83290	84	80L	81809	81555	84	29R	31637	31891	84
76R	83607	83828	73	81R	81872	82093	73	28L	31574	31353	73
77L	84172	83825	115	82L	82437	82090	115	27R	31009	31356	115
78L	85395	84757	212	83L	83568	82894	224	-	-	-	-
79R	85531	87249	572	84R	83668	85386	572	26L	30729	28999	576
80L	88987	87872	371	85L	86988	85873	371	25R	27224	28345	373
81R	89043	89321	92	86R	87046	87324	92	24L	27168	26890	92
82R	89450	89923	157	87R	87454	87927	157	23L	26762	26289	157
-	-	-	-	88R	88138	88512	124	22L	25564	25277	95
83R	90373	91017	214	89R	88857	89501	214	21L	24912	24268	214
84R	91389	92126	245	90R	89903	90640	245	20L	23923	23141	260
85R	92201	92788	195	91.5R	90715	91302	195	19L	23066	22479	195
86L	93363	93178	61	92L	91943	91650	97	18R	21742	22119	125
87L	95533	93716	605	93L	94096	92279	605	17R	19571	21397	608
88R	95566	96018	150	94R	94129	94581	150	16L	19538	19086	150
89R	96086	97252	388	95R	94649	95845	398	15L	19018	17744	424
90R	97345	98736	463	96R	95938	97329	463	14L	17651	16260	463
91R	98860	100047	395	97R	97453	98640	395	13L	16136	14949	395
92R	100398	100637	79	98R	98927	99232	101	-	-	-	-
93L	100986	100819	55	99L	99593	99426	55	12R	14091	14246	51
94L	101563	101096	155	100R	100169	99702	155	11L	13512	13979	155
95R	101656	102747	363	101R	100180	101352	390	10L	13419	12325	364
96R	103549	104220	223	103R	102169	102840	223	89R	103279	103965	228
97R	104303	104716	137	104R	102923	103372	149	90R	104031	104444	137

^aORFs that have been added or altered are highlighted in bold. If a previously annotated ORF is not listed in the table, it has been deleted.
^bPotentially frameshifted ORF
^cWhere an ORF has a potential sequencing error resulting in a frameshift mutation, 2 stop codons are provided in the format X/Y. The first number represents the actual physical stop in the reported sequence. The second number is the proposed stop if a sequencing error occurred.
^dLength of ORF in amino acids

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ISSN: 1743-422X

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