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Table 1 Primer details for the amplification of core and NS2

From: Serendipitous identification of natural Intergenotypic recombinants of hepatitis C in Ireland

Region Polarity Primer sequence  
Core a    Position b
Core A1 Sense 5'-GAGTGCCCCGGGAGGTCTCGTAGA-3' 309–332
Core A2 Antisense 5'-R CCR CAY GTR AN GGTR TCGATGAC-3' 705–728
Core B1 Antisense 5'-GCR AAR CCR CAY GTR AN GGTR TCG-3' 710–733
Core B2 Sense 5'-GGGAGGTCTCGTAGACCGTGCA-3' 318–339
NS2    Position c
NS2 KOS Sense 5'-GCAAGCTCTGTTGAGGATAT-3' 3025–3044
NS2 KOAS Antisense 5'-TGTGAGGCTAGTGACGATGC-3' 3405–3424
NS2 KIS Sense 5'-GGTGGCAAGTACGTCCAGAT-3' 3068–3087
NS2 KIAS Antisense 5'-TGACGATGCAGCCAAGTAAG-3' 3394–3413
  1. a Y = C or T; R = A or G; N = A, T, G or C.
  2. b Reference strain NC_004102 (1a)
  3. c Reference strain AY587845 (2k/1b)