From: Serendipitous identification of natural Intergenotypic recombinants of hepatitis C in Ireland
Region | Polarity | Primer sequence | Â |
---|---|---|---|
Core a | Â | Â | Position b |
Core A1 | Sense | 5'-GAGTGCCCCGGGAGGTCTCGTAGA-3' | 309–332 |
Core A2 | Antisense | 5'-R CCR CAY GTR AN GGTR TCGATGAC-3' | 705–728 |
Core B1 | Antisense | 5'-GCR AAR CCR CAY GTR AN GGTR TCG-3' | 710–733 |
Core B2 | Sense | 5'-GGGAGGTCTCGTAGACCGTGCA-3' | 318–339 |
NS2 | Â | Â | Position c |
NS2 KOS | Sense | 5'-GCAAGCTCTGTTGAGGATAT-3' | 3025–3044 |
NS2 KOAS | Antisense | 5'-TGTGAGGCTAGTGACGATGC-3' | 3405–3424 |
NS2 KIS | Sense | 5'-GGTGGCAAGTACGTCCAGAT-3' | 3068–3087 |
NS2 KIAS | Antisense | 5'-TGACGATGCAGCCAAGTAAG-3' | 3394–3413 |