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Table 2 Amino acid sequence of the VV protein E6R and identified peptides Peptides detected from the Method 1 (SDS-PAGE + LC-ESI-Q-TOF MS), Method 2 (SDS-PAGE + LC-ESI-QIT MS), Method 3 (HPLC + LC-ESI-QIT MS), Method 4 (LC-ESI-Q-TOF MS), and Method 5 (MALDI-TOF/TOF MS) are denoted with an asterisk (*). Peptides that are in bold print have been identified by at least one of the five methods.

From: Pox proteomics: mass spectrometry analysis and identification of Vaccinia virion proteins

Method

MDFIRRKYLIYTVENNIDFLKDDTLSKVNNFTLNHVLALKYLVSNFPQHV

1

                           ***********************

2

       ********************             **********

3

 

4

 

5

 
 

ITK DVLANTNFFVFIHMVRCCKVYEAVLR HAFDAPTLYVK ALTKNYLSFS

1

***                          ***********

2

***                          ***********

3

 

4

 

5

 
 

NAIQSYKETVHKLTQDEK FLEVAEYMDELGELIGVNYDLVLNPLFHGGEP

1

 

2

 

3

 

4

                  ********************************

5

 
 

IK DMEIIFLKLFKKTDFKVVKKLSVIRLLIWAYLSKK DTGIEFADNDRQD

1

                                     *************

2

 

3

 

4

**

5

                                                **

 

IYTLFQQTGRIVHSNLTETFRDYIFPGDK TSYWVWLNESIANDADIVLNR

1

**********

2

                     ********

3

 

4

 

5

*********************

 

HAITMYDK ILSYIYSEIKQGRVNKNMLK LVYIFEPEKDIR ELLLEIIYDI

1

                            ************

2

********

3

 

4

 

5

 
 

PGDILSIIDAKNDDWKKYFISFYKANFINGNTFISDR TFNEDLFRVVVQI

1

                                             *****

2

                                     ********

3

 

4

                                     ********

5

                                             *****

 

DPEYFDNERIMSLFSTSAADIK RFDELDINNSYISNIIYEVNDITLDTMD

1

**********************

2

 

3

 

4

 

5

*********

 

DMKKCQIFNEDTSYYVKEYNTYLFLHESDPMVIENGILKKLSSIKSKSKR

1

 

2

 

3

 

4

 

5

 
 

LNLFSK NILKYYLDGQLAR LGLVLDDYKGDLLVKMINHLKSVEDVSAFVR

1

                   ***************

2

******             *******************************

3

 

4

 

5

 
 

FSTDKNPSILPSLIKTILASYNISIIVLFQRFLR DNLYHVEEFLDK SIHL

1

                                  ************

2

 

3

 

4

 

5

 
 

TKTDKK YILQLIR HGRS

1

 

2

 

3

 

4

 

5

      *******