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Table 3 Comparison of encoded amino acids (AA) from clones described here (top) with other SIV molecular clones (bottom). The number (#) and percent (%) changes (Δ) in the indicated regions of Env and Nef are given.

From: Development and characterization of positively selected brain-adapted SIV

Clone Monkey Derived From #AA Δ in gp120 #AA Δ in gp41 #AA Δ in Nef Δ consensus in Env & Nef
108 225 Viral RNA from Microglia supernatant 0 1 0 0.08%
109 225 Viral RNA from Microglia supernatant 1 0 0 0.08%
122 225 Viral RNA from Microglia supernatant 0 0 0 0.00%
129 225 Viral RNA from Microglia supernatant 1 1 0 0.17%
141 225 Viral RNA from Microglia supernatant 1 2 1 0.35%
142 225 Viral RNA from Microglia supernatant 1 0 1 0.17%
153 321 Viral RNA from Microglia supernatant 1 3 2 0.52%
159 321 Viral RNA from Microglia supernatant 0 2 2 0.35%
169 321 Viral RNA from Microglia supernatant 0 2 1 0.26%
SIVmac1A11 251-79 Proviral DNA from Tissue culture cells 28 8* 18 4.72%
SIVmac32H (pJ5) 32H Proviral DNA from Tissue culture cells 24 14 19 4.98%
SIVmac316 316-85 Proviral DNA from Tissue culture cells 19 8* N/A 3.07%**
SIV/17E-Fr 17E Proviral DNA from Brain & Macrophages 22 11* 20 4.63%
SIVmac239 239-82 Proviral DNA from Tissue culture cells 18 14 15 4.11%
  1. *truncated gp41, **Env only.