Table 4 Codon usage differences between 49 MOCV-1 genes that are conserved in all poxviruses and 50 human genes.
Amino Acid | Fraction of codons with different usage | Codons that have statistically different usage* |
|---|---|---|
Phe | 2/2 | UUU, UUC |
Tyr | 2/2 | UAU, UAC |
His | 2/2 | CAU, CAC |
Gln | 2/2 | CAA, CAG |
Asn | 2/2 | AAU, AAC |
Lys | 2/2 | AAA, AAG |
Asp | 2/2 | GAU, GAC |
Glu | 2/2 | GAA, GAG |
Cys | 2/2 | UGU, GUC |
Leu | 6/6 | UUA, UUG, CUU, CUC, CUA, CUG |
Ile | 3/3 | AUU, AUC, AUA |
Val | 3/4 | GUU, CUA, GUG |
Ser | 5/6 | USU, UCA, UCG, AGU, AGC |
Pro | 4/4 | CCU, CCC, CCA, CCG |
Thr | 3/4 | ACU, ACA, ACG |
Ala | 3/4 | GCU, CGA, GCG |
Arg | 6/6 | CGU, CGC, CGA, CGG, AGA, AGG |
Gly | 3/4 | GGU, GGC, GGA |
Stop | 2/3 | UAG, UGA |