Table 1 Overview of samples used in this study and detected mammalian viral sequences
From: Viral metagenomic analysis of feces of wild small carnivores
No | Species | Date of collection (dd/mm/yyyy) | Observations1 | Analyzed2 | Reads | Detected viral sequences3,4 |
|---|---|---|---|---|---|---|
1 | American mink (Neovison vison) | 08/11/2012 | e | F | 5316 | t.b.c. |
2 | American mink (Neovison vison) | 15/11/2012 | e | RS | 4168 | t.b.c. |
3 | American mink (Neovison vison) | 10/11/2012 | e | F | 7563 | t.b.c. |
4 | American mink (Neovison vison) | 09/11/2012 | e | F | 9041 | n.d. |
5 | American mink (Neovison vison) | 19/09/2012 | e | F | 4919 | t.b.c. |
6 | American mink (Neovison vison) | 13/10/2012 | e | F | 4454 | n.d. |
7 | American mink (Neovison vison) | 21/09/2012 | e | F | 4587 | n.d. |
8 | American mink (Neovison vison) | 26/10/2012 | e | F | 5592 | t.b.c. |
9 | American mink (Neovison vison) | 11/09/2012 | e | F | 5838 | n.d. |
10 | American mink (Neovison vison) | 10/04/2012 | e | F | 6925 | n.d. |
11 | Common genet (Genetta genetta) | 08/11/2012 | lt | RS | 6353 | t.b.c. |
12 | Common genet (Genetta genetta) | 05/11/2012 | fd | F | 8642 | t.b.c. |
13 | Common genet (Genetta genetta) | 04/07/2012 | lt | RS | 5582 | t.b.c. |
14 | Common genet (Genetta genetta) | 09/11/2012 | fd | F | 5217 | Cardiovirus, Picobirnavirus, t.b.c. |
15 | Common genet (Genetta genetta) | 14/12/2012 | fd | RS | 6758 | n.d. |
16 | Common genet (Genetta genetta) | 19/02/2013 | fd | RS | 7327 | t.b.c. |
17 | Common genet (Genetta genetta) | 10/05/2013 | fd | RS | 9068 | t.b.c. |
18 | Eurasian badger (Meles Meles) | 04/01/2013 | fd | RS | 6465 | t.b.c. |
19 | Eurasian badger (Meles Meles) | 13/05/2013 | fd | RS | 11228 | n.d. |
20 | Eurasian badger (Meles Meles) | 12/05/2013 | fd | RS | 3763 | n.d. |
21 | Eurasian badger (Meles Meles) | 21/05/2013 | fd | RS | 6946 | n.d. |
22 | Eurasian otter (Lutra lutra) | 09/01/2013 | fd | F | 5500 | Phlebovirus, t.b.c. |
23 | European mink (Mustela lutreola) | 06/11/2012 | lt | RS | 11356 | t.b.c. |
24 | European mink (Mustela lutreola) | 07/12/2012 | lt | RS | 13933 | t.b.c. |
25 | European mink (Mustela lutreola) | 08/11/2012 | lt | RS | 13119 | n.d. |
26 | European mink (Mustela lutreola) | 16/11/2012 | lt | RS | 7242 | t.b.c. |
27 | European mink (Mustela lutreola) | 26/11/2012 | fd | RS | 10046 | t.b.c. |
28 | European mink (Mustela lutreola) | 7/03/2013 | lt | RS | 9027 | n.d. |
29 | European mink (Mustela lutreola) | 8/03/2013 | lt | RS | 7391 | n.d. |
30 | European mink (Mustela lutreola) | 6/03/2013 | lt | RS | 6593 | t.b.c. |
31 | European mink (Mustela lutreola) | 20/03/2012 | fd | RS | 9418 | n.d. |
32 | European pine marten (Martes martes) | 11/11/2012 | fd | F | 9624 | n.d. |
33 | European pine marten (Martes martes) | 05/03/2013 | fd | RS | 9961 | t.b.c. |
34 | European polecat (Mustela putorius) | 19/02/2013 | lt | RS | 7422 | t.b.c. |
35 | European polecat (Mustela putorius) | 28/02/2013 | fd | RS | 9741 | n.d. |
36 | European polecat (Mustela putorius) | 15/05/2013 | fd | RS | 17970 | n.d. |
37 | Red fox (Vulpes vulpes) | 08/01/2013 | fd | RS | 5163 | Kobuvirus, Phlebovirus |
38 | Red fox (Vulpes vulpes) | 29/01/2013 | fd | RS | 5722 | n.d. |
39 | Red fox (Vulpes vulpes) | 17/03/2013 | fd | F | 5842 | Kobuvirus, t.b.c. |
40 | Red fox (Vulpes vulpes) | 08/04/2013 | fd | F | 8828 | Picobirnavirus, Amdovirus, t.b.c. |
41 | Stone marten (Martes foina) | 15/11/2012 | fd | F | 6809 | t.b.c. |
42 | Wild cat (Felis silvestris) | 24/05/2013 | fd | RS | 7224 | t.b.c. |