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Table 1 Comparison of amino acid sequences in the cytoplasmic tail of different SARS-CoV isolates from human and bat

From: The YXXΦ motif within the severe acute respiratory syndrome coronavirus (SARS-CoV) 3a protein is crucial for its intracellular transport

Isolates Amino acid sequences (141-180) in the cytoplasmic tail of 3aa
Human Isolates
ZJ0301 YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL
URBANI YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL
TWJ YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL
TWI YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL
TOR2 YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL
Sino 3-11 YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL
Sino 1-11 YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL
SIN2774 YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL
SIN2748 YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL
SIN2679 YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL
SIN2677 YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL
SIN2500 YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL
LLJ-2004 YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL
HKU39849 YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL
GD01 YDANFVCWHTHNYDYCIPYNSV TDTIVVTAGD GISTPKL
CUHKU-W1 YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL
CFB/SZ/94/03 YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL
BJ04 YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL
BJ03 YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL
BJ02 YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL
BJ01 YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL
Bat Isolates:
W1V1 YDANFVCWHTHNYDYCIPYNSV TDTIVVTAGD GISTPKL
RsSHC014 YDANFVCWHTHNYDYCIPYNSV TDTIVVTAGD GISTPKL
Rs3367 YDANFVCWHTHNYDYCIPYNSV TDTIVVTAGD GISTPKL
Rs672 YDANFVCWHTHNYDYCIPYNSV TDTIVVTAGD GISTPKL
Rf1 YDANFVCWHTHNYDYCIPYNSV TDTIVVTSGD GISTPKL
HKU3-12 YDANFVCWHTHNYDYCIPYNSV TDTIVVTSGD GISTPKL
279/2005 YDANFVCWHTHNYDYCIP YNS I TDTIVVTSGD GISTPKL
  1. aAmino acid sequences were obtained from National Center for Biotechnology Information (NCBI). The YXXΦ (where X is any amino acid and Φ is an amino acid with a bulky hydrophobic side chain) and EXD motifs are shown in italics whereas mutated motifs are highlighted in bold letters.
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Virology Journal

ISSN: 1743-422X