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Table 1 Comparison of amino acid sequences in the cytoplasmic tail of different SARS-CoV isolates from human and bat

From: The YXXΦ motif within the severe acute respiratory syndrome coronavirus (SARS-CoV) 3a protein is crucial for its intracellular transport

Isolates

Amino acid sequences (141-180) in the cytoplasmic tail of 3aa

Human Isolates

ZJ0301

YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL

URBANI

YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL

TWJ

YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL

TWI

YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL

TOR2

YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL

Sino 3-11

YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL

Sino 1-11

YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL

SIN2774

YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL

SIN2748

YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL

SIN2679

YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL

SIN2677

YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL

SIN2500

YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL

LLJ-2004

YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL

HKU39849

YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL

GD01

YDANFVCWHTHNYDYCIPYNSV TDTIVVTAGD GISTPKL

CUHKU-W1

YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL

CFB/SZ/94/03

YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL

BJ04

YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL

BJ03

YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL

BJ02

YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL

BJ01

YDANFVCWHTHNYDYCIPYNSV TDTIVVTEGD GISTPKL

Bat Isolates:

W1V1

YDANFVCWHTHNYDYCIPYNSV TDTIVVTAGD GISTPKL

RsSHC014

YDANFVCWHTHNYDYCIPYNSV TDTIVVTAGD GISTPKL

Rs3367

YDANFVCWHTHNYDYCIPYNSV TDTIVVTAGD GISTPKL

Rs672

YDANFVCWHTHNYDYCIPYNSV TDTIVVTAGD GISTPKL

Rf1

YDANFVCWHTHNYDYCIPYNSV TDTIVVTSGD GISTPKL

HKU3-12

YDANFVCWHTHNYDYCIPYNSV TDTIVVTSGD GISTPKL

279/2005

YDANFVCWHTHNYDYCIP YNS I TDTIVVTSGD GISTPKL

  1. aAmino acid sequences were obtained from National Center for Biotechnology Information (NCBI). The YXXΦ (where X is any amino acid and Φ is an amino acid with a bulky hydrophobic side chain) and EXD motifs are shown in italics whereas mutated motifs are highlighted in bold letters.