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Table 2 Peptide predictions and affinities

From: Identification of swine influenza virus epitopes and analysis of multiple specificities expressed by cytotoxic T cell subsets

Peptide sequence

NetMHCpan prediction rank

SLA-1*0401 affinity KD(nM)

CTELKLSDY

1.00

16

GTEKLTITY

0.80

34

SSSFSFGGF

0.80

378

YVFVGTSRY

0.10

325

ASYGAGAGY

0.05

19

  1. Peptide sequences selected for affinity analysis based on NetMHCpan prediction ranks and SLA-1*0401 amino acid requirements for binding. The lower the KD value the higher the affinity for binding. Peptides having KD values <500 nM are considered as intermediate affinity ligands whereas a KD value <100 nM represents a high affinity binding peptide ligand.
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Virology Journal

ISSN: 1743-422X