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Table 3 Comparison of HCV NS3(4A) region of Los Alamos and vertex sequences

From: Development of a sensitive RT-PCR method for amplifying and sequencing near full-length HCV genotype 1 RNA from patient samples

Subtype Sequence domain Number of sequences° Length of alignment (base pair) Mean Shannon entropy Average pairwise difference (Standard deviation)
1a Los Alamos Sequences 695 2067 0.132014 7.5% (± 1.9%)
  Vertex Sequences 2111* 2085 0.175243 9.1% (± 4.6%)
1b Los Alamos Sequences 561 2067 0.158275 9.3% (± 1.5%)
  Vertex Sequences 1335† 2085 0.202466 10.6% (± 3.4%)
  1. ° Sequences of HCV NS3(4A) region.
  2. * GenBank accession numbers: KC125008-KC127118.
  3. † GenBank accession numbers: KC123434-KC124768.