Lack of identification of Flaviviruses in oral and cloacal swabs from long- and short-distance migratory birds in Trentino-Alto Adige (North-eastern Italy)

Grisenti, Michela; Arnoldi, Daniele; Rizzolli, Franco; Giacobini, Mario; Bertolotti, Luigi; Rizzoli, Annapaola

doi:10.1186/1743-422X-10-306

Virology Journal

Table 1 Bird species tested in Trentino-Alto Adige in 2011 and 2012

From: Lack of identification of Flaviviruses in oral and cloacal swabs from long- and short-distance migratory birds in Trentino-Alto Adige (North-eastern Italy)

Bird species		Family	Order	Migratory pattern^a	2011 Autumn (n)	2012 Spring (n)	2012 Autumn (n)	Total
Scientific name	Common name
Otus scops	European scops owl	Strigidae	Strigiformes	L	-	-	1	1
Cuculus canorus	Cuckoo	Cucilidae	Cuculiformes	L	-	1	-	1
Jynx torquilla	Wryneck	Picidae	Piciformes	L	-	1	-	1
Aegithalos caudatus	Long tailed tit	Egitalidae	Passeriformes	S	-	2	2	4
Lanius collurio	Red backed shrike	Lanidae	Passeriformes	L	-	5	1	6
Delichon urbica	House Martin	Irundinidae	Passeriformes	L	-	-	5	5
Emberiza schoeniclus	Reed Bunting	Emberizidae	Passeriformes	S	-	3	-	3
Prunella modularis	Dunnoch	Prunellidae	Passeriformes	S	2	2	-	4
Anthus trivialis	Tree pipit	Moracillidae	Passeriformes	L	-	-	1	1
Ficedula hypoleuca	Pied flycatcher	Muscicapidae	Passeriformes	S	-	4	6	10
Muscicapa striata	Spotted flycatcher	Muscicapidae	Passeriformes	L	-	12	-	12
Sylvia borin	Garden Warbler	Silvidae	Passeriformes	L	-	9	1	10
Sylvia curruca	Lesser Whitethroat	Silvidae	Passeriformes	S	-	-	3	3
Hippolais polyglotta	Melodius Warbler	Silvidae	Passeriformes	L	-	2	-	2
Hippolais icterina	Icterin Warbler	Silvidae	Passeriformes	L	-	2	-	2
Acrocephalus scirpaceus	Reed Warbler	Silvidae	Passeriformes	L	-	15	-	15
Acrocephalus palustris	Marsh Warbler	Silvidae	Passeriformes	L	-	5	-	5
Acrocephalus arundinaceus	Great reed Warbler	Silvidae	Passeriformes	L	-	6	-	6
Sylvia atricapilla	Blackcap	Silvidae	Passeriformes	S	1	23	1	25
Locustella naevia	Grashopper Warbler	Silvidae	Passeriformes	L	-	1	-	1
Sylvia melanocephala	Sardinian Warbler	Silvidae	Passeriformes	S	-	1	-	1
Philloscopus trochilus	Willow Warbler	Silvidae	Passeriformes	L	-	10	5	15
Philloscopus collybita	Chiffchaff	Silvidae	Passeriformes	S	-	9	-	9
Philloscopus sibilatrix	Wood Warbler	Silvidae	Passeriformes	L	-	2	-	2
Periparus ater	Coal Tit	Paridae	Passeriformes	S	-	-	7	7
Parus major	Graet Tit	Paridae	Passeriformes	S	-	1	-	1
Phoenicurus phoenicurus	Redstart	Turdidae	Passeriformes	L	-	2	2	4
Phoenicurus ochruros	Black Redstart	Turdidae	Passeriformes	S	-	-	3	3
Oenanthe oenanthe	Wheatear	Turdidae	Passeriformes	S	-	-	1	1
Turdus merula	Blackbird	Turdidae	Passeriformes	S	6	6	15	27
Erithacus rubecula	Robin	Turdidae	Passeriformes	S	9	33	24	66
Turdus viscivorus	Mistle Thrush	Turdidae	Passeriformes	S	1	-	-	1
Turdus philomenos	Song Thrush	Turdidae	Passeriformes	S	10	9	18	37
Turdus iliacus	Redwing	Turdidae	Passeriformes	S	-	-	1	1
Luscinia megarhynchos	Rufus Nightingale	Turdidae	Passeriformes	L	-	6	-	6
Fringilla coelebs	Chaffinch	Fringillidae	Passeriformes	S	7	2	3	12
Coccothraustes coccothraustes	Hawfinch	Fringillidae	Passeriformes	S	4	2	-	6
Carduelis spinus	Siskin	Fringillidae	Passeriformes	S	1	-	3	4
Fringilla montifringilla	Brambling	Fringillidae	Passeriformes	S	2	-	-	2
Total (n)					43	176	103	322

^aEach species was classified as intrapaleartic (S) and transaharian (L).

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ISSN: 1743-422X

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