Table 3 The positions of nucleotide variation in LCRs from the HPV16 variant sub-lineages
From: Association of human papillomavirus type 16 long control region mutation and cervical cancer
nt. position | 7177 | 7193 | 7201 | 7270 | 7287 | 7289 | 7429 | 7521 | 7730 | 7842 | 7874 | 24 | 28 | 46 | 61 | 81 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Prototypea | T | G | T | C | A | A | G | G | A | G | C | C | G | T | T | G |
Asb (no. 15) | C | T | C | T | C | C | G | A | C | A | C | T | G | T | T | T |
Asb (no. 36) | C | T | C | T | C | C | G | A | C | A | C | T | G | T | T | T |
As-sv1c (no. 30) | C | T | C | T | C | C | A | A | C | A | G | T | G | T | T | T |
As-sv14c (no. 42) | C | T | C | T | C | C | A | A | C | A | G | T | A^ | G^ | G^ | T |
nt. position | 7193 | 7233 | 7339 | 7394 | 7395 | 7485 | 7489 | 7521 | 7669 | 7689 | 7729 | 7743 | 7764 | 7786 | 7886 | 28 |
Prototypea | G | A | A | C | C | A | G | G | C | C | A | T | C | C | C | G |
EUR (no. 43) | G | A | A | C | C | A | G | A | C | C | A | T | C | C | C | A^ |
AA1 (no. 47) | T | T | T | T | T | C | A | A | T | A | C | G | T | T | G | G |