A remarkable synergistic effect at the transcriptomic level in peach fruits doubly infected by prunus necrotic ringspot virus and peach latent mosaic viroid

Table 2 Non-reduntant GO categories identified as enriched in down-regulated genes in double infected plants

352 diferential genes, >1.5 fold
		list1	list1 percentage	ratio	list2	list2 percentage
*Biological Process*
GO:0006066	Alcohol metabolic process	21	6.0	2.5	93	2.4
GO:0006508	Proteolysis	35	9.9	1.8	2.1	5.3
GO:0006950	Response to Stress	59	16.8	1.6	386	10.1
GO:0030163	Protein catabolic process	36	10.2	1.9	203	5.3
GO:0046686	Response to cadmiun ion	35	9.9	3.2	119	3.1
GO:0055114	Oxidation reduction	38	10.8	2.0	191	5.0
*Molecular Function*
GO:0001882	Nucleoside binding	65	18.5	1.6	434	113
GO:0005524	ATP binding	60	17.1	1.6	410	10.7
GO:0043169	Cation binding	76	21.6	1.5	532	13.9
GO:0046872	Metal ion binding	73	20.7	1.5	511	13.4
GO:0005515	Protein binding	81	23.0	1.4	623	16.3
GO:0050662	Coenzyme binding	18	5.1	2.4	79	2.1
GO:0016651	oxidoreductase activity, acting on NADH or NADPH	10	2.8	4.0	26	0.7
*Celular component*
GO:0005886	Plasma membrane	73	20.7	1.6	503	13.1
GO:0005829	Cytosol	33	9.4	1.7	206	5.4
GO:0005773	Vacuole	28	8.0	1.9	159	4.2
GO:0005777	Peroxisome	10	2.8	3.5	30	0.8
GO:0048046	Apoplast	16	4.6	2.8	61	1.6
150 genes diferenciales, >2 fold
		list1	list1 percentage	ratio	list2	list2 percentage
*Biological Process*
GO:0006520	Cellular amino acid metabolic process	12	8.0	3.0	102	2.7
GO:0009308	Amine metabolic process	14	9.3	3.0	118	3.1
GO:0009414	Response to water deprivation	9	6.0	5.5	41	1.1
GO:0009628	Response to abiotic stimulus	24	16.0	2.3	265	6.9
GO:0046686	Response to cadmium ion	14	9.3	3.0	119	3.1
GO:0055114	Oxidation reduction	18	12.0	2.4	191	5.0
*Molecular Function*
NO GOs
*Celular component*
GO:000577	vacuole	19	12.7	3	159	4.2

The absolute number of genes belonging to each category is specified in list1 (differentially expressed genes) and list2 (total number of genes in the whole microarray). Ratio represents the number of times that one category is enriched. The analysis was performed for the genes with a fold change value above 1.5 (upper table, 352 genes) and above 2.0 (lower table, 150 genes).

ISSN: 1743-422X