From: Genetic diversity and recombination analysis of sweepoviruses from Brazil
Species-Strain | Accession no | Identification according to databases | Origin | Reference | Acronym suggested in this studyb |
---|---|---|---|---|---|
HQ393450 | SPLCV-US[BR:PA:08] a | Brazil | This study | SPLCV-US[BR:PA:08] | |
SPLCV-US | HQ393451 | SPLCV-US[BR:SE:PV:08] | Brazil | This study | SPLCV-US[BR:SE:PV:08] |
HQ393443 | SPLCV-US[BR:BA:CA1:08] | Brazil | This study | SPLCV-US[BR:BA:CA1:08] | |
HQ393446 | SPLCV-US[BR:BA:CA2:08] | Brazil | This study | SPLCV-US[BR:BA:CA2:08] | |
FJ969834 | SPLCV-RS2[BR:Est1] | Brazil | Paprotka et al., 2010 | SPLCV-US[BR:RS:Est1:07] | |
FJ969837 | SPLCV-RS2[BR:Ros1] | Brazil | Paprotka et al., 2010 | SPLCV-US[BR:RS:Ros1:07] | |
FJ969835 | SPLCV-RS2[BR:Mac1] | Brazil | Paprotka et al., 2010 | SPLCV-US[BR:RS:Mac1:07] | |
HQ393471 | SPLCV-US[BR:SP:AM1:09] | Brazil | This study | SPLCV-US[BR:SP:AM1:09] | |
HQ393472 | SPLCV-US[BR:SP:AM2:09] | Brazil | This study | SPLCV-US[BR:SP:AM2:09] | |
FJ969836 | SPLCV-RS2[BR:Poa1] | Brazil | Paprotka et al., 2010 | SPLCV-US[BR:RS:Poa1:07] | |
HQ393475 | SPLCV-US[BR:SP:AM4:09] | Brazil | This study | SPLCV-US[BR:SP:AM4:09] | |
HQ393474 | SPLCV-US[BR:SP:AM3:09] | Brazil | This study | SPLCV-US[BR:SP:AM3:09] | |
HM754641 | SPLCV-[Haenam1] | South Korea | GenBank | SPLCV-US[KR:Hae1:09] | |
HM754637 | SPLCV-[Yeojoo 507] | South Korea | GenBank | SPLCV-US[KR:Yeo507:09] | |
FJ560719 | SPLCKrV-[J-508] | South Korea | GenBank | SPLCV-US[KR:Yeo508:08] | |
HM754639 | SPLCV-[Haenam532] | South Korea | GenBank | SPLCV-US[KR:Hae532:09] | |
HM754638 | SPLCV-[Haenam 519–3] | South Korea | GenBank | SPLCV-US[KR:Hae519:09] | |
HM754635 | SPLCV-[Yeojoo 388] | South Korea | GenBank | SPLCV-US[KR:Yeo388:09] | |
HM754636 | SPLCV-[Nonsan 445–2] | South Korea | GenBank | SPLCV-US[KR:Non445-2:09] | |
HM754634 | SPLCV-[Chungju 263] | South Korea | GenBank | SPLCV-US[KR:Chu263:09] | |
HM754640 | SPLCV-[Haenam 618–2] | South Korea | GenBank | SPLCV-US[KR:Hae618:09] | |
AF104036 | SPLCV-US[US:Lou:94] | USA | Lotrakul & Valverde, 1999 | SPLCV-US[US:Lou:94] | |
HQ393453 | SPLCV-US[BR:RO:OPO:08] | Brazil | This study | SPLCV-US[BR:RO:OPO:08] | |
FJ176701 | SPLCV-[Eastern China] | China | GenBank | SPLCV-US[CN:Jia:08] | |
AB433788 | SPLCV-[Japan:Kyoto:1998] | Japan | GenBank | SPLCV-US[JR:Kyo:98] | |
HQ333141 | SPLCV-[US:MS:WS1-4] | USA | Zhang & Ling, 2011 | SPLCV-US[US:MS:WS1-4:07] | |
HQ333142 | SPLCV-[US:MS:WS3-8] | USA | Zhang & Ling, 2011 | SPLCV-US[US:MS:WS3-8:07] | |
HQ333140 | SPLCV-[US:MS:4B-14] | USA | Zhang & Ling, 2011 | SPLCV-US[US:MS:4b-14:07] | |
HQ333139 | SPLCV-[US:MS:1B-1A] | USA | Zhang & Ling, 2011 | SPLCV-US[US:MS:1b-1a:07] | |
SPLCV-CN | EU267799 | SPLCV-[RL7] | China | GenBank | SPLCV-CN[CN:Yn:RL7:07] |
FN806776 | SPLCV-[Y338] | China | GenBank | SPLCV-CN[CN:Yn338:09] | |
EU253456 | SPLCV-[RL31] | China | GenBank | SPLCV-CN[CN:Yn:RL31:07] | |
SPLCV-SP | HQ393473 | SPLCV-SP[BR:AlvM:09] | Brazil | Albuquerque et al., 2011 | SPLCV-SP[BR:SP:AlvM:09] |
HQ393476 | SPLCV-SP[BR:SP:PP:09] | Brazil | This study | SPLCV-SP[BR:SP:PP:09] | |
SPLCV-JP | AB433787 | SPLCV-[Japan:Kumamoto:1998] | Japan | GenBank | SPLCV-JP[JR:Kum:98] |
AB433786 | SPLCV-[Japan:Miyazaki:1996] | Japan | GenBank | SPLCV-JP[JR:Miy:96] | |
SPLCV-SC | HQ333138 | SPLCV-[US:SC:646B-11] | USA | Zhang & Ling, 2011 | SPLCV-SC[US:SC:646-B11:06] |
HQ333137 | SPLCV-[US:SC:634–7] | USA | Zhang & Ling, 2011 | SPLCV-SC[US:SC:634–7:06] | |
HQ333135 | SPLCV-[US:SC:377–23] | USA | Zhang & Ling, 2011 | SPLCV-SC[US:SC:377–23:06] | |
HQ333136 | SPLCV-[US:SC:634–2] | USA | Zhang & Ling, 2011 | SPLCV-SC[US:SC:634–2:06] | |
SPLCV-BR | HQ393445 | SPLCV-BR[BR:BA:CA:08] | Brazil | This study | SPLCV-BR[BR:BA:CA:08] |
HQ393460 | SPLCV-BR[BR:RO:Cac:08] | Brazil | This study | SPLCV-BR[BR:RO:Cac:08] | |
HQ393455 | SPLCV-BR[BR:RO:OPO:08] | Brazil | This study | SPLCV-BR[BR:RO:OPO:08] | |
HQ393449 | SPLCV-BR[BR:SE:Ria:08] | Brazil | This study | SPLCV-BR[BR:SE:Ria:08] | |
HQ393442 | SPLCV-BR[BR:BA:Uru:08] | Brazil | This study | SPLCV-BR[BR:BA:Uru:08] | |
SPLCV-PR | DQ644563 | SPLCV-[N4] | Puerto Rico | GenBank | SPLCV-PR[PR:Me-N4:06] |
DQ644562 | SPLCV-[PR80-N2] | Puerto Rico | GenBank | SPLCV-PR[PR:80-N2:06] | |
SPLCV-PE | HQ393456 | SPLCV-PE[BR:RO:PV:08] | Brazil | This study | SPLCV-PE[BR:RO:PV:08] |
HQ393464 | SPLCV-PE[BR:RS:MP1:09] | Brazil | This study | SPLCV-PE[BR:RS:MP1:09] | |
HQ393465 | SPLCV-PE[BR:RS:MP2:09] | Brazil | This study | SPLCV-PE[BR:RS:MP2:09] | |
HQ393467 | SPLCV-PE[BR:RS:MP5:09] | Brazil | This study | SPLCV-PE[BR:RS:MP5:09] | |
HQ393462 | SPLCV-PE[BR:PE:CSF:08] | Brazil | This study | SPLCV-PE[BR:PE:CSF:08] | |
HQ393463 | SPLCV-PE[BR:PE:CSF:08] | Brazil | This study | SPLCV-PE[BR:PE:CSF:08] | |
HQ393461 | SPLCV-PE[BR:PB:PF:09] | Brazil | This study | SPLCV-PE[BR:PB:PF:09] | |
HQ393466 | SPLCV-PE[BR:RS:MP4:09] | Brazil | This study | SPLCV-PE[BR:RS:MP4:09] | |
HQ393469 | SPLCV-PE[BR:RS:MP7:09] | Brazil | This study | SPLCV-PE[BR:RS:MP7:09] | |
HQ393468 | SPLCV-PE[BR:RS:MP6:09] | Brazil | This study | SPLCV-PE[BR:RS:MP6:09] | |
HQ393470 | SPLCV-PE[BR:RS:MP3:09] | Brazil | This study | SPLCV-PE[BR:RS:MP3:09] | |
SPLCV-Fu | FJ515898 | SPLCV-[Fp-3] | China | Yang et al., 2009 | SPLCV-Fu[CN:Fj:Fp3:07] |
FJ515897 | SPLCV-[Fp-2] | China | Yang et al., 2009 | SPLCV-Fu[CN:Fj:Fp2:07] | |
FJ515896 | SPLCV-[Fp-1] | China | Yang et al., 2009 | SPLCV-Fu[CN:Fj:Fp1:07] | |
SPLCV-ES | EU856364 | SPLCV-ES[ES:CI:BG12:02] | Spain | Lozano et al., 2009 | SPLCV-ES[ES:CI:BG12:02] |
EF456744 | SPLCV-ES[ES:CI:BG6:02] | Spain | Lozano et al., 2009 | SPLCV-ES[ES:CI:BG6:02] | |
EU856366 | SPLCV-ES[ES:CI:BG13:02] | Spain | Lozano et al., 2009 | SPLCV-ES[ES:CI:BG13:02] | |
SPLCV-IT | AJ586885 | SPLCV-IT[IT:Sic:02] | Italy | Briddon et al., 2005 | SPLCV-IT[IT:Sic:02] |
SPLCLaV-BR | FJ969833 | SPLCV-RS1[BR:Tav1] | Brazil | Paprotka et al., 2010 | SPLCLaV-BR[BR:RS:Tav1:07] |
SPLCLaV-ES | EF456746 | SPLCLaV-[ES:CI:BG27:02] | Spain | Lozano et al., 2009 | SPLCLaV-ES[ES:CI:BG27:02] |
EU839579 | SPLCLaV-[ES:Mal:BG30:06] | Spain | Lozano et al., 2009 | SPLCLaV-ES[ES:Mal:BG30:06] | |
SPLCBeV | FN432356 | SPLCBV-[India:West Bengal:2008] | India | GenBank | SPLCBeV-[IN:Ben:08] |
SPLCBRV | FJ969832 | SPLCV-CE[BR:For1] | Brazil | Paprotka et al., 2010 | SPLCBRV-[BR:CE:For1:07] |
SPLCCaV | EF456742 | SPLCCaV-[ES:CI:BG4:02] | Spain | Lozano et al., 2009 | SPLCCaV-[ES:CI:BG4:02] |
EF456745 | SPLCCaV-[ES:CI:BG7:02] | Spain | Lozano et al., 2009 | SPLCCaV-[ES:CI:BG7:02] | |
EU856365 | SPLCCaV-[ES:CI:BG21:02] | Spain | Lozano et al., 2009 | SPLCCaV-[ES:CI:BG21:02] | |
FJ529203 | SPLCCaV-[ES:CI:BG25:02] | Spain | Lozano et al., 2009 | SPLCCaV-[ES:CI:BG25:02] | |
SPLCShV | EU309693 | SPLCV | China | GenBank | SPLCShV-[CN:Sha:07] |
SPLCGoV | AF326775 | SPLCGV-[16] | USA | Lotrakul et al., 2003 | SPLCGoV-[US:Geo:16] |
MerLCuV-US | HQ333143 | SPGVaV-[US:MS:1B-3] | USA | Zhang & Ling, 2011 | MerLCuV-US[US:MS:1B-3:07] |
MerLCuV-BR | FJ969829 | SPGVaV-PA[BR:Bel1] | Brazil | Paprotka et al., 2010 | MerLCuV-BR[BR:PA:Bel1:07] |
MerLCuV-PR | DQ644561 | MeLCV-[PR:N1] | Puerto Rico | GenBank | MeLCuV-PR[PR:N1:06] |
IYVMaV | EU839576 | IYVV-[ES:Mal:IG1:06] | Spain | Lozano et al., 2009 | IYVMaV-[ES:Mal:IG1:06] |
IYVV | EU839578 | IYVV-[ES:Mal:IG5:06] | Spain | Lozano et al., 2009 | IYVV-[ES:Mal:IG5:06] |
AJ132548 | IYVV-[ES:98] | Spain | Banks et al., 1999 | IYVV-[ES:98] | |
EU839577 | IYVV-[ES:Mal:IG3:06] | Spain | Lozano et al., 2009 | IYVV-[ES:Mal:IG3:06] | |
SPLCSPV | HQ393477 | SPLCSPV-[BR:AlvM:09] | Brazil | Albuquerque et al., 2011 | SPLCSPV-[BR:SP:AlvM:09] |
SPMV | FJ969831 | SPMaV-[BR:BSB1] | Brazil | Paprotka et al., 2010 | SPMV-[BR:BSB1:07] |
SPLCSCV | HQ333144 | SPLCSCV-[US:SC:648B-9] | USA | Zhang & Ling, 2011 | SPLCSCV-[US:SC:648-B9:06] |
SPLCUV | FR751068 | SPLCUV-[UG:KAMP:08] | Uganda | Wasswa et al., 2011 | SPLCUV-[UG:KAMP:08] |
SPLCESV | EF456741 | SPLCESV-[ES:CI:BG1:02] | Spain | Lozano et al., 2009 | SPLCESV-[ES:CI:BG1:02] |
EF456743 | SPLCESV-[ES:CI:BG5:02] | Spain | Lozano et al., 2009 | SPLCESV-[ES:CI:BG5:02] | |
HQ393448 | SPLCESV-[BR:BA:Uti:08] | Brazil | This study | SPLCESV-[BR:BA:Uti:08] | |
FJ151200 | SPLCESV-[ES:Mal:IG2:06] | Spain | Lozano et al., 2009 | SPLCESV-[ES:Mal:IG2:06] | |
HQ393458 | SPLCESV-[BR:RO:Cac:08] | Brazil | This study | SPLCESV-[BR:RO:Cac:08] | |
SPGVV-PB | HQ393444 | SPGVV-PB[BR:BA:CA:08] | Brazil | This study | SPGVV-PB[BR:BA:CA:08] |
FJ969830 | SPGVaV-PB1[BR:Sou1] | Brazil | Paprotka et al., 2010 | SPGVV-PB[BR:PB:Sou1:07] | |
SPGVV-RO | HQ393459 | SPGVV-RO[BR:RO:Cac:08] | Brazil | This study | SPGVV-RO[BR:RO:Cac:08] |
HQ393457 | SPGVV-RO[BR:RO:PV2:08] | Brazil | This study | SPGVV-RO[BR:RO:PV2:08] | |
HQ393454 | SPGVV-RO[BR:RO:OPO:08] | Brazil | This study | SPGVV-RO[BR:RO:OPO:08] | |
HQ393447 | SPGVV-RO[BR:BA:Uti:08] | Brazil | This study | SPGVV-RO[BR:BA:Uti:08] | |
HQ393452 | SPGVV-RO[BR:SE:PV1:08] | Brazil | This study | SPGVV-RO[BR:SE:PV1:08] | |
SPLCCNV | DQ512731 | SPLCV-[CN] | China | Luan et al., 2007 | SPLCCNV-[CN:05] |
JF736657 | SPLCV-B3 | China | GenBank | SPLCCNV-[CN:Zhe:10] |