From: Sequencing of bovine herpesvirus 4 v.test strain reveals important genome features
BoHV-4 ORF | Strand | Starta | Stopa | HHV-8 homologueb | HHV-1 homologuec | Annotation and comments |
---|---|---|---|---|---|---|
Bo1 | - | 272 | 460 | -- | -- | Early in-frame STOP codon |
ORF 3 | + | 441 | 4307 | -- | -- | BORFA1; v-FGAM-synthase |
Bo2 | + | 4435 | 4638 | -- | -- | |
Bo3 | + | 5072 | 5299 | -- | -- | |
ORF 6 | + | 5703 | 9107 | ORF 6 | UL 29 | single-stranded DNA-binding protein MDBP |
ORF 7 | + | 9112 | 11190 | ORF 7 | UL 28 | transport protein |
ORF 8 | + | 11180 | 13804 | ORF 8 | UL 27 | glycoprotein B |
ORF 9 | + | 13944 | 16961 | ORF 9 | UL 30 | DNA polymerase |
ORF 10 | + | 17057 | 18337 | ORF 10 | -- | BORFB1 |
Bo4 | - | 18604 | 19101 | -- | -- | short ORF of immediate early transcript 1 |
Bo5 | - | 19170 | 20355 | K5 | -- | long ORF of immediate early transcript 1 |
Bo6 | + | 20297 | 20590 | -- | -- | Early in-frame STOP codon |
Bo7 | - | 20670 | 20994 | -- | -- | Disrupted frame |
Bo8 | + | 21318 | 21521 | -- | -- | overlapping with late 1.7 kb RNA |
ORF 16 | + | 22967 | 23647 | ORF 16 | -- | BORFB2; v-Bcl-2 protein |
ORF 17 | - | 23710 | 25260 | ORF 17 | UL 26 | capsid protein |
ORF 18 | + | 25259 | 26077 | ORF 18 | -- | |
ORF 19 | - | 26029 | 27705 | ORF 19 | UL 25 | tegument protein |
ORF 20 | - | 27407 | 28219 | ORF 20 | UL 24 | |
ORF 21 | + | 28203 | 29540 | ORF 21 | UL 23 | thymidine kinase |
ORF 22 | + | 29551 | 31674 | ORF 22 | UL 22 | glycoprotein H |
ORF 23 | - | 31671 | 32873 | ORF 23 | -- | |
ORF 24 | - | 32851 | 35109 | ORF 24 | -- | |
ORF 25 | + | 35099 | 39220 | ORF 25 | UL 19 | major capsid protein |
ORF 26 | + | 39256 | 40170 | ORF 26 | UL 18 | capsid protein |
ORF 27 | + | 40184 | 40829 | ORF 27 | -- | |
Bo9 | + | 40831 | 41130 | -- | -- | |
ORF 29 | - | 41154 | 46328 | ORF 29 | UL 15 | cleavage/packaging protein |
ORF 30 | + | 42306 | 42548 | ORF 30 | -- | |
ORF 31 | + | 42482 | 43123 | ORF 31 | -- | |
ORF 32 | + | 43069 | 44439 | ORF 32 | UL 17 | viral DNA cleavage/packaging protein |
ORF 33 | + | 44432 | 45430 | ORF 33 | UL 16 | |
ORF 34 | + | 46327 | 47313 | ORF 34 | -- | |
ORF 35 | + | 47285 | 47758 | ORF 35 | -- | |
ORF 36 | + | 47787 | 48950 | ORF 36 | UL 13 | kinase |
ORF 37 | + | 48958 | 50427 | ORF 37 | UL 12 | alkaline exonuclease |
ORF 38 | + | 50379 | 50585 | ORF 38 | -- | |
ORF 39 | - | 50652 | 51761 | ORF 39 | UL 10 | glycoprotein M |
ORF 40 | + | 51877 | 53247 | ORF 40 | UL 8 | helicase-primase complex component |
ORF 41 | + | 53360 | 53881 | ORF 41 | -- | helicase-primase complex component |
ORF 42 | - | 53873 | 54748 | ORF 42 | UL 7 | |
ORF 43 | - | 54525 | 56375 | ORF 43 | UL 6 | capsid protein |
ORF 44 | + | 56323 | 58701 | ORF 44 | UL 5 | helicase |
ORF 45 | - | 58805 | 59530 | ORF 45 | -- | |
ORF 46 | - | 59530 | 60291 | ORF 46 | UL 2 | uracil-DNA-glycosidase |
ORF 47 | - | 60309 | 60731 | ORF 47 | -- | glycoprotein L |
ORF 48 | - | 60838 | 62382 | ORF 48 | -- | |
ORF 50 | + | 62586 | 65179 | ORF 50 | -- | immediate early transcript 2; R transactivator protein |
ORF 49 | - | 62600 | 63499 | ORF 49 | -- | |
Bo10 | + | 65696 | 66595 | -- | UL 54 | glycoprotein gp80 |
ORF 52 | - | 66621 | 67007 | ORF 52 | -- | |
ORF 53 | - | 67073 | 67345 | ORF 53 | -- | |
ORF 54 | + | 67414 | 68262 | ORF 54 | UL 50 | dUTPase |
ORF 55 | - | 68321 | 68923 | ORF 55 | -- | |
ORF 56 | + | 68887 | 71418 | ORF 56 | UL 52 | DNA replication protein |
ORF 57 | + | 71512 | 72870 | ORF 57 | -- | possible post-transcriptional transactivator |
ORF 58 | - | 73294 | 74346 | ORF 58 | -- | |
ORF 59 | - | 74360 | 75535 | ORF 59 | -- | DNA replication protein |
ORF 60 | - | 75688 | 76605 | ORF 60 | UL 40 | ribonucleotide reductase small subunit |
ORF 61 | - | 76639 | 79020 | ORF 61 | UL 39 | ribonucleotide reductase large subunit |
ORF 62 | - | 79002 | 80021 | ORF 62 | UL 38 | assembly/DNA maturation protein |
ORF 63 | + | 79978 | 82797 | ORF 63 | -- | tegument protein |
ORF 64 | + | 82812 | 90488 | ORF 64 | UL 36 | tegument protein |
ORF 65 | - | 90504 | 90896 | ORF 65 | -- | capsid protein |
ORF 66 | - | 90893 | 92167 | ORF 66 | -- | |
ORF 67 | - | 92107 | 92877 | ORF 67 | UL 34 | tegument protein |
ORF 67.5 | - | 92881 | 93144 | ORF 67.5 | UL 33 | Disrupted (late) methionine |
ORF 68 | + | 93155 | 94504 | ORF 68 | UL 32 | probable glycoprotein |
ORF 69 | + | 94512 | 95405 | ORF 69 | UL 31 | |
Bo11 | - | 96158 | 96703 | -- | -- | |
Bo12 | + | 97442 | 97684 | -- | -- | Early in-frame STOP codon |
ORF 71 | - | 98328 | 98876 | K13/ORF 71 | -- | BORFE2; v-FLIP |
Bo13 | + | 98838 | 98983 | -- | -- | Disrupted frame |
ORF 73 | - | 99022 | 99783 | ORF 73 | -- | BORFE3, LANA homologous |
ORF 75 | - | 100274 | 103606 | ORF 75 | -- | Disrupted (late) methionine; tegument protein/v-FGAM-synthetase |
Bo14 | - | 104273 | 104785 | -- | -- | |
Bo15 | - | 105724 | 106038 | -- | -- | |
Bo16 | + | 106225 | 106494 | -- | -- | |
Bo17 | + | 106681 | 108003 | -- | -- | viral beta-1,6-N-acetylglucosaminyltransferase |