Primer | Sequence | Position |
---|---|---|
5'endFW | atgatgtgtagggtattccccc | 1-22 |
Orf1univFW | ccctttaaccatgtctggc | 111-130 |
Orf1-1fw | catcc gggtg ctgctgg ctt | 336-355 |
Orf1-2fw | ggag ccaccc acgtgtt gac | 681-701 |
Lav49fw | aatcaatggtattcgtgctg | 1072-1091 |
Orf1-3-fw | tcaat gcctacaa ctgcccg | 1631-1650 |
Orf1-4-fw | cttgta taaa ttgct attgg | 1988-2007 |
Orf1-5-fw | acaa cagg cctc gtaa ggg | 2472-2490 |
Lav73fw | aaaacttggcgctgcacgtc | 3102-3121 |
Orf1-6fw | ggtcc atta gcca gcgcct | 3451-3469 |
Orf1-7fw | cttgag cagcg ccaa cattg | 3686-3705 |
Lav33fw | ggtgttggcacggcgagag | 4129-4147 |
Orf1-8fw | catgg ctgtt gccca agtgt | 4538-4557 |
Orf1-9fw | ttgt gctt acgcc tggccca | 4859-4878 |
Orf1-10fw | ggcgac tcct ataat cgtat | 5364-5383 |
Orf1-11fw | ccaa gcac ttcg cagg tccg | 5701-5720 |
Orf1-12fw | ggctt ggctg ccgaaa tcgg | 6096-6115 |
Orf1-13fw | aatgaa gggag tctt gtcta | 6566-6586 |
Lav92fw | gtgtatccctcggctaccac | 6891-6911 |
Orf1-14fw | catta gtcaa cttcaa ggtt | 7280-7299 |
Orf1-15fw | gga ccc tga gcgg catgaa | 7765-7783 |
Lav12fw | ccaagaactccatggcaggt | 8172-8191 |
Orf1-16fw | ggaaaaacaaattcaaggag | 8442-8461 |
Orf1-17fw | tccag cccatg ctggt ata | 8817-8835 |
Lav51fw | gtgtttgtttcactcacact | 9316-9335 |
Amp6fwint | catcagaccatgtttgacat | 9764-9783 |
Orf1-18fw | aaggc caggaa cacca gggt | 10136-10155 |
Orf1-19fw | cccagta tttgca ccttt gc | 10633-10652 |
Orf1-20fw | cggccgta cttgc aaccag | 11132-11150 |
Orf2afw | gts aca cck tat gatta cg | 11387-11406 |
LavORF2aseqfw | gtgttcgacaacgcccacacgc | 11577-11598 |
Orf3fw | agcc taca gta caa ca ccac | 12234-12253 |
LavORF3seq1fw | agcgttgagctcatcttccc | 12261-12280 |
Orf4fw | cgg ccc ait tcc atccigag | 12672-12691 |
Orf5Pesfw | tga tca cat tcg gtt gct | 13320-13337 |
Orf6fw | tacc aa ctt tc ttc tggac | 13838-13856 |
Orf7fw | tgg cccc tgccc aic acg | 14328-14345 |
Orf1-1-rev | gtcaa cacgt gggtgg ctcc | 701-681 |
Lavgsprev | cgacttgacattctagtcca | 900-881 |
Orf1-2-rev | agat gcca aacgg acgaa cc | 1304-1285 |
Orf1-3-rev | gcag cctt cgga gcag acgc | 1796-1777 |
ORF1-4-rev | cggtg aaca cgag acacc tg | 2252-2233 |
Orf1-5-rev | gctg atgt tgtc ggatt ctg | 2615-2596 |
Orf1-6-rev | ctggg aaca ggagg cgg tgt | 3202-3182 |
Orf1-7-rev | gggttgg atg gagtc gagaa | 3730-3711 |
Lav33rev | ccccaacacttgtgacaacg | 3982-3963 |
Orf1-8rev | gt ccgag tccac tacaatc | 4403-4385 |
Orf1-9rev | agag ttgt gccac tgct gaaa | 4755-4735 |
Amp3intrev2 | cagagaaggccggttattcct | 5023-5003 |
Amp3intrev | gattccaatgagatcacca | 5609-5591 |
Orf1-10rev | gctc ggac taaaa cagc tgg | 5959-5940 |
Lav92rev | caccaatgatgatgataggg | 6222-6203 |
Orf1-11rev | cttg caca gaca cagtttt | 6720-6702 |
Orf1-12rev | ttcaa ggca gttg tca ggct | 7190-7171 |
Orf1-13rev | tca ttaa gacg acacc ggaa | 7406-7386 |
Orf1-14rev | cttg ccat cgga cacaa gg | 7903-7885 |
Orf1-15rev | tga cacc actg agcg ccga | 8396-8378 |
Orf1-16rev | agaca cact ggtg acggggt | 8696-8676 |
Lav51rev | aagaaagctgggtttgtcag | 8971-8952 |
Orf1-17rev | cggaa tctg tttcaa cacag | 9460-9441 |
Orf1-18rev | ccagg tggtt gcaa tatcca | 9944-9925 |
Orf1-19rev | aaaactccc gaag ttggtcg | 10385-10366 |
Orf1-20rev | aggc ttgc tgtag tgggcat | 10762-10743 |
Lav82rev | ttcaagctggaagtaggc | 11244-11225 |
Orf1-21rev | tgatttt gctcc acag tgac | 11741-11722 |
Orf2arev | tcatr ccc tatt y tgc acca | 12558-12539 |
Orf3rev | agaa aa gg cacgc ag aaa gca | 13184-13165 |
Orf4rev | cattcagctcgcataicgtcaag | 13569-13547 |
Orf5Pesrev | ggg cgt ata tca tta tag gtg | 14100-14079 |
Orf6rev | acccagc aa ctgg cacag | 14606-14589 |
Orf7rev | tcg ccc taa ttg aa tagg tga | 14966-14946 |