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Table 1 Total number of small RNAs reads from PVY-N, PVY-NTN, PVY-O strains mapped to their respective Potato virus Y genome

From: The effects of potato virus Y-derived virus small interfering RNAs of three biologically distinct strains on potato (Solanum tuberosum) transcriptome

S.No

sRNA library

Reference genome

Total no. of reads aligned

Unique vsiRNAs Mapped

1

PVY-N

PVY-N (AY884983.1)

3,504,410

37,453

2

PVY-NTN

PVY-NTN (FJ204166)

4,397,244

38,053

3

PVY-O

PVY-O (HQ912895.1)

3,277,411

32,086

  1. Virus-derived small interfering RNAs (vsiRNAs) derived from three small RNA (sRNA) independent libraries of Potato virus Y (PVY) strains, tobacco veinal-necrotic strain (PVY-N), necrosis tuber-necrotic strain (PVY-NTN) and ordinary strain (PVY-O) in potato cv. Russet Burbank were mapped to their respective reference genome using Bowtie v 1.1.0, allowing for perfect matches only