Table 2 Similarity between expressed sequence tags in the forward suppression subtractive hybridization library and genes in GenBank
From: Cyclophilin B facilitates the replication of Orf virus
EST No. | Species | Gene homology | Gene name | Fold upregulation |
|---|---|---|---|---|
F-1 | Bos Taurus | Bos taurus beta-actin (ACTB) mRNA | ACTB | 1.5 |
F-2 | Bos Taurus | Bos taurus actin, gamma 1 (ACTG1), mRNA | ACTG1 | 1.7 |
F-3 | unknown | unknown | unknown | 3.4 |
F-4 | Bos Taurus | Bos taurus vacuole membrane protein 1 (VMP1), mRNA | VMP1 | 3.7 |
F-5 | Bos Taurus | Bos taurus ring finger protein 19B (RNF19B), mRNA | RNF19B | 1.9 |
F-6 | Bos Taurus | Bos taurus zinc finger protein 408 (ZNF408), mRNA | ZNF408 | 2.3 |
F-7 | Bos Taurus | Bos taurus zinc finger CCCH-type containing 14 (ZC3H14), transcript variant 1, mRNA | ZC3H14 | 1.5 |
F-8 | Bos Taurus | Bos taurus ATPase, Na+/K+ transporting, beta 1 polypeptide (ATP1B1), mRNA. | ATP1B1 | 3.4 |
F-9 | Bos Taurus | Bos taurus poly-U binding splicing factor 60KDa (PUF60), mRNA. | PUF60 | 2.3 |
F-10 | unknown | unknown | unknown | 2.6 |
F-11 | Bos Taurus | Bos taurus eukaryotic translation initiation factor 3, subunit L (EIF3L), mRNA | EIF3L | 3.7 |
F-12 | Bos Taurus | Bos taurus eukaryotic translation elongation factor 1 alpha 1 EEF1A1), mRNA | EEF1A1 | 3.4 |
F-13 | Bos Taurus | Bos taurus eukaryotic translation initiation factor 5 (EIF5), mRNA | EIF5 | 2.9 |
F-14 | Bos Taurus | Bos taurus cytohesin 2 (CYTH2), mRNA | CYTH2 | 1.6 |
F-15 | Bos Taurus | Bos taurus transmembrane emp24 protein transport domain containing 1 (TMED1), mRNA | TMED1 | 3.6 |
F-16 | Bos Taurus | Bos taurus transmembrane protein 179B (TMEM179B), mRNA | TMEM179B | 2.8 |
F-17 | Bos Taurus | Bos taurus neuropilin 2 (NRP2), mRNA | NRP2 | 2.1 |
F-18 | Bos Taurus | Sin3A-associated protein, 18Â kDa (SAP18), mRNA | SAP18 | 2.4 |
F-19 | Bos Taurus | Bos taurus renin binding protein (RENBP), mRNA | RENBP | 1.3 |
F-20 | Bos Taurus | Bos taurus signal sequence receptor, alpha (SSR1), mRNA | SSR1 | 1.9 |
F-21 | Bos Taurus | Bos taurus mitogen-activated protein kinase kinase 6 (MAP2K6), mRNA | MAP2K6/MKK6 | 9.2 |
F-22 | Bos Taurus | Bos Taurus solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 (SLC1A1), mRNA. | SLC1A1 | 2.7 |
F-23 | Bos Taurus | Bos taurus isolate Mcg489 mitochondrion, complete genome | Mcg489 mitochondrion | 2.5 |
F-24 | Bos Taurus | Calmodulin 1 (phosphorylase kinase, delta) (CALM1), mRNA | CALM1 | 2.3 |
F-25 | Bos Taurus | Bos taurus enhancer of rudimentary homolog (Drosophila) (ERH), mRNA | ERH | 1.7 |
F-26 | Bos Taurus | Bos taurus threonyl-tRNA synthetase-like 1 (TARSL1), mRNA, complete cds. | TARSL1 | 2.1 |
F-27 | Bos Taurus | Bos taurus threonyl-tRNA synthetase 2, mitochondrial (putative) (TARS2), mRNA | TARS2 | 1.8 |
F-28 | Bos Taurus | Bos taurus S100 calcium binding protein A2 (S100A2), mRNA | S100A2 | 9.7 |
F-29 | Bos Taurus | Bos taurus lactate dehydrogenase B (LDHB), mRNA, complete cds. | LDHB | 3.5 |
F-30 | Bos Taurus | Bos taurus H3 histone, family 3A (H3F3A), mRNA. | H3F3A | 4.2 |
F-31 | Bos Taurus | Bos taurus heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) (HNRNPU), mRNA. | HNRNPU | 2.9 |
F-32 | Bos Taurus | Bos taurus RAB2A, member RAS oncogene family (RAB2A), mRNA. | RAB2A | 1.5 |
F-33 | Bos Taurus | Bos taurus alanyl-tRNA synthetase (AARS), mRNA | AARS | 1.9 |
F-34 | Bos Taurus | Bos taurus minichromosome maintenance complex component 4 (MCM4), mRNA | MCM4 | 2.7 |
F-35 | Bos Taurus | Bos taurus tubulin, beta 6, mRNA | TUBB6 | 1.3 |
F-36 | Bos Taurus | Bos taurus tubulin, alpha 1c (TUBA1C), mRNA | TUBA1C | 1.7 |
F-37 | Bos Taurus | Bos taurus tubulin, alpha 1b (TUBA1B), mRNA | TUBA1B | 1.2 |
F-38 | Bos Taurus | Bos taurus tropomyosin 1 (alpha) (TPM1), mRNA | TPM1 | 2.0 |
F-39 | Bos Taurus | Bos taurus tropomyosin 4 (TPM4), mRNA | TPM4 | 1.5 |
F-40 | Bos Taurus | Bos taurus minichromosome maintenance complex component 6 (MCM6), mRNA | MCM6 | 2.3 |
F-41 | Bos Taurus | Bos taurus chromosome 10 open reading frame, human C14orf1 (C10H14orf1), mRNA. | C10H14orf1 | 2.4 |
F-42 | Bos Taurus | Bos taurus CLPTM1-like (CLPTM1L), mRNA | CLPTM1L | 4.3 |
F-43 | Bos Taurus | Bos taurus CD151 molecule (Raph blood group) (CD151), mRNA | CD151 | 7.6 |
F-44 | Bos Taurus | Bos taurus ubiquinol-cytochrome c reductase binding protein (UQCRB), mRNA. | UQCRB | 2.6 |
F-45 | Bos Taurus | Bos taurus low molecular mass ubiquinone-binding protein mRNA, complete cds. | Low molecular mass ubiquinone-binding protein | 2.1 |
F-46 | Bos Taurus | Bos taurus dynein, cytoplasmic 1, light intermediate chain 1 (DYNC1LI1), mRNA | DYNC1LI1 | 3.5 |
F-47 | Bos Taurus | Bos taurus glucose-6-phosphate isomerase (GPI), mRNA | GPI | 2.9 |
F-48 | Bos Taurus | Bos taurus galactosidase, beta 1 (GLB1), mRNA | GLB1 | 2.4 |
F-49 | Bos Taurus | Bos taurus proteasome (prosome, macropain) activator subunit 1 (PA28 alpha) (PSME1), mRNA. | PSME1 | 1.3 |
F-50 | Bos Taurus | Bos taurus peptidylprolyl isomerase B (cyclophilin B) (PPIB), mRNA | PPIB | 10.2 |
F-51 | Bos Taurus | Bos taurus peroxiredoxin 2 (PRDX2), mRNA. | PRDX2 | 3.4 |
F-52 | Bos Taurus | Bos taurus proteolipid protein 2 (colonic epithelium-enriched) (PLP2), mRNA. | PLP2 | 3.7 |
F-53 | Bos Taurus | Bos taurus voucher proven bull 27,223 mitochondrion, complete genome. | Bos taurus voucher proven bull 27,223 mitochondrion | 2.1 |
F-54 | Bos Taurus | Bos taurus Fas-activated serine/threonine kinase (FASTK), mRNA. | FASTK | 4.6 |
F-55 | Bos Taurus | Bos taurus ferritin, light polypeptide (FTL), mRNA | FTL | 2.5 |
F-56 | Bos Taurus | Bos taurus Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (FAU), mRNA. | FAU | 1.2 |
F-57 | Bos Taurus | Bos taurus acyl-CoA thioesterase 7 (ACOT7), mRNA | ACOT7 | 1.9 |
F-58 | Bos Taurus | Bos taurus adenine phosphoribosyltransferase (APRT), mRNA | APRT | 1.5 |
F-59 | Bos Taurus | Bos taurus mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (MGAT1), mRNA, complete cds | MGAT1 | 1.7 |
F-60 | Bos Taurus | Bos taurus lactate dehydrogenase C (LDHC), transcript variant 1, mRNA. | LDHC | 2.3 |