From: Isolation of Tibet orbivirus from Culicoides and associated infections in livestock in Yunnan, China
Segment | Length (bp) | GC% | Protein (aa) | 5′NCR (bp) | Terminal sequence (5′–3′) | 3′NCR (bp) | Putative function | GenBank Accession no. |
---|---|---|---|---|---|---|---|---|
S1 | 3950 | 41.32 | 1304 | 11 | GUAAAAUCA---AUACACUUAC | 24 | VP1: RNA-dependent RNA polymerase | KU754026 |
S2 | 2901 | 40.09 | 950 | 13 | GUAAAAAUC---UUAAACUUAC | 35 | VP2: outer capsid protein; controls virus serotype; most variable protein; contains neutralizing epitopes | KU754027 |
S3 | 2769 | 44.42 | 899 | 17 | GUAAAAUUU---AUACACUUAC | 52 | VP3(T2): forms sub-core capsid layer | KU754028 |
S4 | 1978 | 42.82 | 643 | 8 | GUAAAAACA---UUACACUUAC | 38 | VP4: Cap; protein within the sub-core; shows capping activities and methyltransferase type 1 and type 2 activities | KU754029 |
S5 | 1775 | 43.83 | 554 | 31 | GUAAAAAAG---UUACACUUAC | 79 | NS1: TuP; forms tubules of unknown function within the cytoplasm of infected cells | KU754030 |
S6 | 1642 | 43.42 | 526 | 31 | GUAAAAAGA---UUUCACUUAC | 30 | VP5: outer capsid protein | KU754031 |
S7 | 1165 | 44.72 | 349 | 17 | GUAAAAAUU---UUACACUUAC | 98 | VP7(T13): immunodominant major serogroup specific antigen | KU754032 |
S8 | 1142 | 41.94 | 359 | 20 | GUAAAAAAU---UUAAACUUAC | 42 | NS2: single-stranded RNA-binding protein | KU754033 |
S9 | 1100 | 44.73 | 346 | 14 | GUAAAAAAU---UAAAACUUAC | 45 | VP6: helicase for unwinding and binding to ssRNA and dsRNA; NTPase | KU754034 |
S10 | 832 | 41.47 | 234 | 21 | GUAAAAAAG---CCCAACUUAC | 106 | NS3: involved in cell exit; glycoprotein | KU754035 |
 |  | 42.59 | Consensus | GUAAAAA/U---------C/AACUUAC |  |  |  |