Virology Journal

Table 3 ZIKV codon usage

From: Nucleotide composition of the Zika virus RNA genome and its codon usage

AA	Codon^a	Number	Proportion	4-group^a	6-group^1a	G/A	U/C	\|	AA	Codon^a	Number	Proportion	4-group^a	6-group^a	G/A	U/C
Ala	GCG	30	0.11	C > A > U > G				\|	Asn	AAU	36	0.35				C > U
	GCA	80	0.28					\|		AAC	68	0.65
	GCU	77	0.27					\|	Pro	CCG	11	0.08	A > C > U > G
	GCC	96	0.34					\|		CCA	65	0.46
Cys	UGU	35	0.55				U > C	\|		CCU	28	0.2
	UGC	29	0.45					\|		CCC	38	0.27
Asp	GAU	61	0.4				C > U	\|	Gln	CAG	38	0.5			G = A
	GAC	93	0.6					\|		CAA	38	0.5
Glu	GAG	115	0.52			G > A		\|	Arg	AGG	57	0.26		A > G
	GAA	107	0.48					\|		AGA	93	0.42
Phe	UUU	45	0.49				C = U	\|		CGG	21	0.1		C > G > U > A
	UUC	46	0.51					\|		CGA	11	0.05
Gly	GGG	67	0.22	A > G > C > U				\|		CGU	14	0.06
	GGA	150	0.49					\|		CGC	24	0.11
	GGT	40	0.13					\|	Ser	AGU	36	0.18		C = U
	GGC	51	0.17					\|		AGC	38	0.19
His	CAU	34	0.46				C > U	\|		UCG	18	0.09		A > U > C > G
	CAC	40	0.54					\|		UCA	50	0.25
Ile	AUA	51	0.29					\|		UCU	29	0.15
	AUU	46	0.26					\|		UCC	28	0.14
	AUC	78	0.45					\|	Thr	ACG	20	0.09	A > C > U > G
Lys	AAG	111	0.59			G > A		\|		ACA	91	0.4
	AAA	77	0.41					\|		ACU	53	0.23
Leu	UUG	69	0.22		G > A			\|		ACC	62	0.27
	UUA	20	0.06					\|	Val	GUG	115	0.42	G > C > U > A
	CUG	94	0.3		G > C > U > A			\|		GUA	31	0.11
	CUA	31	0.1					\|		GUU	55	0.2
	CUU	46	0.15					\|		GUC	70	0.26
	CUC	53	0.17					\|	Trp	UGG	92	1
Met	AUG	130	1					\|	Tyr	UAU	38	0.44				C > U
								\|		UAC	49	0.56

^aCpG and UpA in bold/underlined

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ISSN: 1743-422X

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