Table 2 Evolutionary analysis of Egyptian H5N1 viruses
From: Phylodynamics of avian influenza clade 2.2.1 H5N1 viruses in Egypt
Virus cluster | Number of viruses | Duration (No. of years) | BEAST Mean (95% HPD) |
|---|---|---|---|
Egypt classic 2.2.1 | 75 | 2006–2009 (4) | 4 × 10−3 (3.4 − 4.7 × 10−3) |
Egypt endemic 2.2.1.2 | 221 | 2009–2014 (6) | 6.9 × 10−3 (1.3 − 9.6 × 10−3) |
Egypt variant 2.2.1.1 | 31 | 2007–2008 (2) | 3.8 × 10−3 (1.6 − 6.4 × 10−3) |
Egypt variant 2.2.1.1a | 38 | 2008–2011 (4) | 7.2 × 10−3 (5.8 − 8.8 × 10−3) |
Total Egypt variant 2.2.1.1 | 69 | 2007–2011 (5) | 6.1 × 10−3 (4.8 − 7.3 × 10−3) |
Total Egypt H5N1-2.2.1 | 365 | 2006–2014 (9) | 5 × 10−3 (2.1 − 6.7 × 10−3) |