Table 3 Percentage similarity between the nucleic acid and amino acid sequences of each of the open reading frames and the complete genome of Chicken/BYP/Pakistan/2010 and a representative sequence from each genotype
Strain (accession no) | Ulster (AY562991) | LaSota (AY845400) | Mukteswar (EF201805) | Hert/33 (AY7411404) | Largo/71 (AY562990) | IT-227/82 (AJ880277) | NA-1 (DQ659677) | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Genotype | I | II | III | IV | V | VI | VII | |||||||
| Â | nt (%) | aa (%) | nt (%) | aa (%) | nt (%) | aa (%) | nt (%) | aa (%) | nt (%) | aa (%) | nt (%) | aa (%) | nt (%) | aa (%) |
NP | 87.5 | 93.1 | 84.8 | 91.8 | 86.7 | 92.7 | 89.2 | 94.1 | 89.5 | 94.1 | 90.1 | 95.1 | 91.8 | 94.9 |
P | 86.4 | 84.3 | 88.1 | 87.1 | 85.8 | 84.3 | 87.5 | 87.6 | 86.7 | 82.3 | 87.6 | 82.8 | 88.3 | 85.6 |
V | 86.9 | 80.0 | 91.8 | 85.5 | 85.8 | 81.7 | 87.8 | 83.8 | 85.4 | 79.2 | 86.4 | 77.5 | 86.1 | 83.3 |
M | 85.1 | 91.0 | 84.3 | 89.3 | 86.3 | 91.8 | 87.7 | 94.2 | 88.7 | 96.7 | 90.0 | 96.2 | 90.9 | 97.5 |
F | 86.5 | 91.3 | 84.1 | 88.8 | 86.0 | 91.5 | 88.5 | 93.5 | 88.1 | 92.8 | 89.6 | 95.3 | 90.9 | 95.7 |
HN a | 84.4 | 88.8 | 81.2 | 85.8 | 84.3 | 87.8 | 86.0 | 89.0 | 87.8 | 91.1 | 88.6 | 92.5 | 89.4 | 93.5 |
L | 88.0 | 94.9 | 87.0 | 92.7 | 87.6 | 94.3 | 88.9 | 95.2 | 89.8 | 96.0 | 90.5 | 95.6 | 90.3 | 95.1 |
Complete Genome | 85.2 | - | 84.0 | - | 85.0 | - | 86.7 | - | 87.4 | - | 88.3 | - | 89.0 | - |