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Table 1 List of cDNAs up-regulated during PDH infection with DHBV

From: Differential gene expression analysis of in vitro duck hepatitis B virus infected primary duck hepatocyte cultures

No.

Name of the clone

Abundance Ratio

BLAST Result

BLAST/tBLASTx

Amplicon Size (bp)

e-value

GenBank Accession No.

1

F22

2.41

Cadherin 11, type 2, OB-cadherin (osteoblast) (CDH11)-Gallus gallus

BLAST

462

0

JG662697

2

F125

2.23

Pyruvate dehydrogenase E1-beta subunit variant 3-like-Taeniopygia guttata

BLAST

268

2.00E-85

JG662698

3

F106

2.08

Anas platyrhynchos female-specific sequence

tBLASTx

371

3.00E-04

JG662699

4

F8

2.04

Similar to SH3 domain containing 19-Taeniopygia guttata

tBLASTx

678

4.00E-07

JG662700

5

F71

2

Ubiquitin-like, containing PHD and RING finger domains, 1 (UHRF1)-Gallus gallus

BLAST

593

0

JG662701

6

F21

1.87

Zinc finger CCCH-type containing 13 (ZC3H13)-Gallus gallus

BLAST

681

0

JG662702

7

F13

1.77

Succinate-CoA ligase, GDP-forming, alpha subunit(SUCLG1)-Gallus gallus

BLAST

767

0

JG662703

8

F76

1.76

ElaC homolog 2 (E. coli) (ELAC2)-Gallus gallus

tBLASTx

218

1.00E-14

JG662704

9

F19

1.58

CWC22 spliceosome-associated protein homolog-Taeniopygia guttata

BLAST

680

0

JG662705

10

F70

1.55

Similar to KIAA2019 protein/AHNAK nucleoprotein 2-Gallus gallus

BLAST

544

1.00E-150

JG662706

11

F46

1.51

Filamin B, beta-Gallus gallus

BLAST

655

1.00E-140

JG662707

12

F77

1.45

Tumor necrosis factor receptor superfamily,member 6b, decoy (TNFRSF6B)-Gallus gallus

tBLASTx

527

5.00E-07

JG662708

13

F131

1.44

Nuclear protein Matrin 3 (MATR3)-Gallus gallus

BLAST

448

0

JG662709

14

F45

1.42

Heat shock transcription factor 2 (HSF2)-Gallus gallus

BLAST

755

0

JG662710

15

F74

1.42

High mobility group AT-hook 2 (HMGA2)-Gallus gallus

BLAST

209

2.00E-49

JG662711

16

F6

1.4

CLE7-Gallus gallus

BLAST

541

0

JG662712

17

F16

1.35

Cu/Zn superoxide dismutase (SOD1)-Melopsittacus undulatus

BLAST

346

8.00E-31

JG662713

18

F43

1.33

Exonuclease NEF-sp-Gallus gallus

BLAST

680

9.00E-143

JG662714

19

F26

1.32

Component of oligomeric golgi complex 3 (COG3)-Bos taurus

tBLASTx

308

0.002

JG662715

20

F42

1.31

CD9 protein-Anas platyrhynchos

BLAST

748

0

JG662716

21

F127

1.31

Junco hyemalis 164 gene, partial sequence

tBLASTx

234

5.00E-16

JG662717

22

F17

1.29

Quaking homolog, KH domain-Taeniopygia guttata

BLAST

678

0

JG662718

23

F44

1.29

Alanine-glyoxylate aminotransferase 2-Gallus gallus

tBLASTx

721

5.00E-21

JG662719

24

F135

1.27

Leucine-rich repeats and calponin homology (CH) domain containing 4-Oryctolagus cuniculus

tBLASTx

288

0.4

JG662720

25

F14

1.24

Clathrin, light chain A (CLTA)-Gallus gallus

BLAST

673

0

JG662721

26

F83

1.2

Sequestosome 1-Gallus gallus

BLAST

562

0

JG662722

27

F10

1.18

RAB 32, member of Ras oncogene-Gallus gallus

BLAST

743

0

JG662723

28

F30

1.16

Ribosomal protein L6 (RPL6)-Gallus gallus

BLAST

591

0

JG662724

29

F64

1.16

Holocytochrome c synthase (cytochrome c heme-lyase)-Gallus gallus

tBLASTx

421

8.00E-52

JG662725

30

F32

1.16

Lysosomal-associated membrane protein 1-Taeniopygia guttata

tBLASTx

591

4.00E-93

JG662726

31

F7

1.14

Serine protease 23-Gallus gallus

BLAST

740

3.00E-168

JG662727

32

F18

1.09

Beta-catenin isolate 3-Anas platyrhynchos

BLAST

710

0

JG662728

33

F52

1.09

Zebrafish DNA sequence from clone CH211-276C22 in linkage group 6

tBLASTx

218

2.2

JG662729

34

F25

1.08

Gallus gallus finished cDNA, clone ChEST457d18

tBLASTx

696

2.00E-27

JG662730

35

F59

1.07

Leucine proline-enriched proteoglycan (leprecan)1/prolyl 3-hydroxylase 1 (P3H1)-Gallus gallus

BLAST

581

0

JG662731

36

F12

1.07

Ribophorin I-Gallus gallus

BLAST

796

0

JG662732

37

F87

1.06

Gallus gallus finished cDNA, clone ChEST855m19

BLAST

505

3.00E-91

JG662733

38

F95

1.06

Spastic paraplegia 3A (autosomal dominant)-Gallus gallus

BLAST

316

3.00E-54

JG662734

39

F107

1.06

High-mobility group box 3-Taeniopygia guttata

BLAST

276

2.00E-136

JG662735

40

F1

1.05

ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2 (ATP5J2)-Gallus gallus

tBLASTx

199

9.00E-18

JG662736

41

F78

1.03

Ubiquitin specific peptidase 47 (USP47)-Gallus gallus

BLAST

695

0

JG662737

42

F88

1.03

No significant similarity found

tBLASTx

360

-

JG662738